| .. |
|
ariadne
|
|
|
|
artemis
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
avida
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
babel
|
|
|
|
biococoa
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
biojava
|
|
|
|
blat
|
Update to upstream version 36
|
2015-01-01 18:17:53 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
|
|
|
consed
|
|
|
|
crux
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
emboss
|
Bump portrevision after png update
|
2014-12-25 20:54:41 +00:00 |
|
fasta
|
|
|
|
fasta3
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
fastdnaml
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
fluctuate
|
|
|
|
garlic
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
gff2ps
|
|
|
|
gmap
|
|
|
|
gperiodic
|
|
|
|
grappa
|
|
|
|
hmmer
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
htslib
|
HTSlib is an implementation of a unified C library for accessing common file
|
2014-12-14 22:35:07 +00:00 |
|
iolib
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
jalview
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
lagan
|
|
|
|
lamarc
|
|
|
|
libsbml
|
- Convert USE_PYTHON -> USES leftovers missed in the previous commits
|
2015-01-04 08:23:23 +00:00 |
|
linux-foldingathome
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
mafft
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
mapm3
|
|
|
|
migrate
|
- Update to 3.6.5
|
2014-12-06 14:54:48 +00:00 |
|
molden
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
|
mopac
|
- Upadate biology/mopac to version 1.15
|
2014-12-16 22:10:23 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
muscle
|
|
|
|
ncbi-blast+
|
Fix PKGNAMEPREFIX of biology/ncbi-blast+, so that the resulting package is
|
2014-12-31 00:31:55 +00:00 |
|
ncbi-toolkit
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
njplot
|
|
|
|
ortep3
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
|
p5-AcePerl
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Das
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Das-Lite
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-GFF3
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Glite
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Graphics
|
- Update to 2.39
|
2014-12-07 07:44:06 +00:00 |
|
p5-Bio-MAGETAB
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-NEXUS
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Phylo
|
- Update to 0.58
|
2014-12-07 04:41:47 +00:00 |
|
p5-Bio-SCF
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-bioperl
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-bioperl-run
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
paml
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
phrap
|
- Fix various distinfo errors
|
2014-10-16 08:55:30 +00:00 |
|
phred
|
|
|
|
phylip
|
- Update to version 3.696
|
2014-11-02 14:13:59 +00:00 |
|
phyml
|
Convert to USES=autoreconf
|
2014-12-28 19:14:13 +00:00 |
|
platon
|
Mark BROKEN: Unfetchable
|
2015-01-10 09:41:07 +00:00 |
|
plink
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
|
plinkseq
|
- Update to 0.10
|
2014-10-12 03:16:10 +00:00 |
|
povchem
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
primer3
|
|
|
|
protomol
|
Bump portrevision after png update
|
2014-12-25 20:54:41 +00:00 |
|
psi88
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
|
py-biopython
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
pycogent
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
pyfasta
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
python-nexus
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
recombine
|
|
|
|
ruby-bio
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
samtools
|
Samtools implements various utilities for post-processing alignments in the
|
2014-12-15 21:59:19 +00:00 |
|
seaview
|
Change my non-FreeBSD MAINTAINER mail to bofh@
|
2014-12-24 00:14:11 +00:00 |
|
seqan
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
seqio
|
|
|
|
seqtools
|
biology/seqtools: 4.30 -> 4.31
|
2014-12-13 18:10:31 +00:00 |
|
sim4
|
|
|
|
ssaha
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
t_coffee
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
|
tinker
|
biology/tinker: 6.2.6 -> 7.0.1
|
2015-01-04 15:21:12 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
|
tRNAscan-SE
|
|
|
|
ugene
|
Update to version 1.15.1.
|
2015-01-06 05:28:58 +00:00 |
|
velvet
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
wise
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
xmolwt
|
devel/glib12 x11-toolkits/gtk12:
|
2014-09-13 15:11:27 +00:00 |
|
Makefile
|
Remove expired ports:
|
2015-01-01 01:13:11 +00:00 |
