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freebsd-ports/biology
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Ade Lovett 3f651573ad Whoa there, boy, that's a mighty big commit y'all have there... 
Begin autotools sanitization sequence by requiring ports to explicitly
specify which version of {libtool,autoconf,automake} they need, erasing
the concept of a "system default".

For ports-in-waiting:

	USE_LIBTOOL=YES		->	USE_LIBTOOL_VER=13
	USE_AUTOCONF=YES	->	USE_AUTOCONF_VER=213
	USE_AUTOMAKE=YES	->	USE_AUTOMAKE_VER=14

Ports attempting to use the old style system after June 1st 2004 will be
sorely disappointed.
2004-03-14 06:17:56 +00:00
..
act Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
artemis Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
avida Maintainer reports being unable to look after this port any longer. 2004-03-07 00:18:27 +00:00
babel - Fix build on AMD64 2004-02-01 22:02:22 +00:00
biojava Add SIZE. 2004-01-27 20:51:07 +00:00
chemeq Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
clustalw - Add an end-of-string to each line of the input 2003-08-28 04:51:02 +00:00
coalesce Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
crimap Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
deft
distribfold Update to 20040226 release 2004-02-27 00:01:02 +00:00
dna-qc BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
emboss Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
fasta Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
fasta3 BROKEN: Checksum mismatch 2004-02-21 19:31:10 +00:00
fastdnaml Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
flip Correct whitespace in COMMENT 2004-02-07 03:34:43 +00:00
fluctuate Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
garlic BROKEN: Checksum mismatch 2004-02-22 00:43:16 +00:00
genpak Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
gff2ps Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
gperiodic Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
grappa Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
hmmer Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
kinemage Use PLIST_FILES (bento-tested, marcus-reviewed). 2004-02-06 13:12:53 +00:00
L-Breeder Use PLIST_FILES (bento-tested, marcus-reviewed). 2004-02-06 13:12:53 +00:00
lamarc
libgenome Whoa there, boy, that's a mighty big commit y'all have there... 2004-03-14 06:17:56 +00:00
lsysexp Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
migrate BROKEN on alpha: Does not compile 2004-02-23 03:59:05 +00:00
molden Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
mopac Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
nab ${MASTER_SITES} are slow. This patch adds a mirror site to help 2003-11-06 11:32:30 +00:00
ncbi-toolkit Use the FIND and XARGS macros introduced in bsd.port.mk 1.391. 2003-11-13 14:45:08 +00:00
nclever s/NOPORTSDOCS/NOPORTDOCS/ [1] 2003-07-11 11:01:13 +00:00
ortep3 Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
p5-AcePerl BROKEN on amd64 and ia64: Does not compile (missing -fPIC) 2004-03-07 13:00:02 +00:00
p5-bioperl Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6. 2004-03-08 03:29:16 +00:00
paml Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
phylip - Update to 3.6.b 2004-01-31 16:06:24 +00:00
pkg
platon - Update to last snapshot 2003-12-07 00:29:56 +00:00
povchem Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignore 2004-03-09 00:17:05 +00:00
primer3 - Fix MASTER_SITES 2004-02-27 22:20:43 +00:00
psi88 BROKEN: Does not fetch 2004-02-21 21:48:55 +00:00
py-biopython Upgrade to 1.23. 2004-02-09 21:40:47 +00:00
pymol Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
rasmol Add SIZE. 2004-01-27 20:51:07 +00:00
recombine Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
ruby-bio Update to 0.5.3. 2003-10-14 22:25:59 +00:00
seaview - Update to version 2003.11.25 2004-01-29 10:09:29 +00:00
seqio Respect CC and CFLAGS 2003-10-23 00:01:04 +00:00
sim4 - Update to version 2003.09.21 2004-03-12 13:53:23 +00:00
spdbv
t_coffee Use the CPIO macro defined in bsd.port.mk. 2004-01-22 12:18:43 +00:00
tinker - Update checksum again, seems author removes .ps version of documentation 2003-11-21 22:28:34 +00:00
treepuzzle Use PLIST_FILES (bento-tested, marcus-reviewed). 2004-02-06 13:12:53 +00:00
treeviewx - Update to version 0.4 2004-02-28 09:56:06 +00:00
tRNAscan-SE Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
wise Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
xdrawchem Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
xmolwt Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
Makefile new port:biology/lsysexp 2003-09-03 02:23:23 +00:00