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freebsd-ports/science
History
Dmitry Marakasov ae4a912461 - Update to 2.41 
PR:		201178
Submitted by:	tkato432@yahoo.com
Differential Revision:
2015-06-30 20:25:55 +00:00
..
2d-rewriter Cleanup plist 2014-11-12 18:48:53 +00:00
afni Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
avogadro Add patch to fix the build with CMake 3.2. 2015-06-15 21:49:52 +00:00
bddsolve science/bddsolve: Set environment, use CXXFLAGS, cleanup 2015-02-25 12:01:52 +00:00
bft
bodr Cleanup plist 2014-11-12 18:48:53 +00:00
brian - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
buddy Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
cdcl Cleanup plist 2014-11-12 18:48:53 +00:00
cdf Cleanup DIST* variables. 2015-05-11 18:34:57 +00:00
cdo - Update graphics/proj to 4.9.1 2015-06-15 13:03:11 +00:00
cgnslib - Update to 1.8.15 2015-05-24 08:10:28 +00:00
cgribex - Use INSTALL_TARGET=install-strip instead of STRIP_CMD 2015-01-19 19:51:01 +00:00
checkmol
chemical-mime-data Split devel/gettext in devel/gettext-runtime and devel/gettext-tools. The 2014-11-29 18:22:32 +00:00
chemtool Cleanup plist 2014-11-12 18:48:53 +00:00
chemtool-devel Cleanup plist 2014-11-12 18:48:53 +00:00
clhep science/clhep: Update version 2.2.0.6=>2.2.0.8 2015-06-17 08:34:24 +00:00
colt
crf++ MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
dcl Cleanup plist 2014-11-12 18:48:53 +00:00
devisor Cleanup plist 2014-11-12 18:48:53 +00:00
dlpoly-classic - Update net/openmpi to 1.8.4 2014-12-26 14:24:12 +00:00
ecs - Update to 1.8.15 2015-05-24 08:10:28 +00:00
epte
fastcap Cleanup plist 2014-11-12 18:48:53 +00:00
fasthenry Cleanup plist 2014-11-12 18:48:53 +00:00
fisicalab MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
fvcom
fvcom-mpi - Update net/openmpi to 1.8.4 2014-12-26 14:24:12 +00:00
fvm - Update to 1.8.15 2015-05-24 08:10:28 +00:00
gchemutils MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
getdp Cleanup plist 2014-11-12 18:48:53 +00:00
ghemical - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
ghmm Reset maintainership: 2014-12-02 22:40:56 +00:00
gnudatalanguage - Update to 1.8.15 2015-05-24 08:10:28 +00:00
gramps sciense/gramps: drop dependency on py-xml 2015-06-20 09:54:35 +00:00
grib_api - Update to 1.13.1 2015-06-15 14:42:53 +00:00
gromacs - Update to 5.0.5 2015-05-19 01:59:50 +00:00
gsmc Convert to USES=autoreconf 2015-06-21 13:40:06 +00:00
gtamsanalyzer - Strip binary 2015-06-18 19:48:35 +00:00
gwyddion - Update to 2.41 2015-06-30 20:25:55 +00:00
h5utils - Update to 1.8.15 2015-05-24 08:10:28 +00:00
harminv - Switch to guile2 2015-03-10 20:45:19 +00:00
hdf Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
hdf5 - Use DISTVERSIONSUFFIX instead of DISTNAME 2015-06-13 11:11:52 +00:00
hdf-java Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
hs-bio
InsightToolkit - Update to 4.7.2 2015-06-08 20:08:07 +00:00
isaac-cfd
jmol Cleanup plist 2014-11-12 18:48:53 +00:00
jstrack Change my non-FreeBSD MAINTAINER mail to bofh@ 2014-12-24 00:14:11 +00:00
kalzium Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
kst2 - Switch my ports to USE_QT4=linguisttools_build and adjust Qt components 2015-02-24 21:46:28 +00:00
lamprop
libctl science/libctl: update to 3.2.2 2015-01-04 12:56:56 +00:00
libghemical - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
libint
libkml - Cleanup GH_* knobs: 2015-05-13 18:59:21 +00:00
liblinear Cleanup DIST* variables. 2015-05-11 18:34:57 +00:00
liboglappth Cleanup plist 2014-11-12 18:48:53 +00:00
libquantum
libsvm Cleanup DIST* variables. 2015-05-11 18:34:57 +00:00
libsvm-python Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
linsmith Cleanup plist 2014-11-12 18:48:53 +00:00
massxpert science/massxpert: Fix two logical errors (found by gcc5) 2015-03-22 00:06:34 +00:00
mbdyn - Use blaslapack 2015-02-05 22:51:22 +00:00
mcstas science/mcstas: USE_BISON is not used 2015-01-05 18:23:27 +00:00
mcstas-comps New port: science/mcstas-comps 2015-01-05 09:38:16 +00:00
medit cleanup plist 2014-12-20 19:35:10 +00:00
meep - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mei Cleanup plist 2014-11-12 18:48:53 +00:00
metaf2xml Remove no longer needed patch, this completes r378490. 2015-02-10 20:17:17 +00:00
minc2 - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mol2ps cleanup plist 2014-12-20 19:35:10 +00:00
mpb - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mpqc - Fix shebangs 2015-06-11 09:27:05 +00:00
mpqc-mpich
ncs Upgrade ncs to 2.0.8 with its dependencies. 2015-05-14 17:31:29 +00:00
netcdf - Update to 1.8.15 2015-05-24 08:10:28 +00:00
netcdf-cxx - Cleanup GH_* knobs: use DISTVERSIONPREFIX 2015-05-13 18:59:26 +00:00
netcdf-fortran - Cleanup GH_* knobs: 2015-05-13 18:59:31 +00:00
nifticlib
openbabel science/openbabel: Support gcc5 (taken from upstream) 2015-04-18 13:49:18 +00:00
openkim Cleanup plist 2014-11-12 18:48:53 +00:00
orthanc - Update from 0.8.6 to 0.9.0 2015-06-19 02:24:08 +00:00
p5-Algorithm-SVMLight Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-3DBuilder Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Bond-Find Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Canonicalize Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Elements Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-MDLMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-Mopac Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-PDB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SLN Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMARTS Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMILES - Fix shebangs 2015-05-28 18:15:01 +00:00
p5-Chemistry-File-VRML Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-XYZ Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-FormulaPattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-InternalCoords Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Isotope Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-MacroMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-MidasPattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Mok Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Mol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Pattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Reaction Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Ring Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-BUFR After r390893, chmod u+w/u-w for stripping perl XS modules is unnecessary, 2015-06-29 15:47:44 +00:00
p5-Geo-Coordinates-Converter MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
p5-Geo-Coordinates-Converter-iArea Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-ReadGRIB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-WebService-Elevation-USGS - Add PORTSCOUT 2015-06-23 12:21:35 +00:00
p5-PerlMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Physics-Unit Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
paje - Strip binaries 2015-06-18 19:49:14 +00:00
paraview Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
pnetcdf - Update to 1.6.1 2015-06-02 18:38:28 +00:00
psychopy science/psychopy: update to 1.82.01 and overhaul 2015-04-29 13:53:09 +00:00
pulseview
py-cdo - Update to 1.2.6 2015-06-05 18:57:17 +00:00
py-coards - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-DendroPy - Don't cat pkg-message from Makefiles 2015-05-27 00:15:04 +00:00
py-h5py - Update to 1.8.15 2015-05-24 08:10:28 +00:00
py-hcluster Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
py-mdp Change my non-FreeBSD MAINTAINER mail to bofh@ 2014-12-24 00:14:11 +00:00
py-mlpy Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
py-netCDF4 - Update to 1.8.15 2015-05-24 08:10:28 +00:00
py-obspy - Fix shebangs 2015-06-05 21:10:33 +00:00
py-paida - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pupynere - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pyaixi Canonicalize a few licenses 2014-12-07 00:07:47 +00:00
py-pydap - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pydicom - Fix shebangs 2015-06-05 21:10:18 +00:00
py-pysal
py-scikit-learn MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
py-scikit-sparse scikits-sparse is a Python module for sparse matrix calculations. 2015-06-14 12:39:04 +00:00
py-scimath - Unbreak 2015-03-14 15:07:54 +00:00
py-scipy - Cleanup Makefile 2015-04-04 19:37:30 +00:00
py-ws2300 - Add missing files to plist 2015-06-05 21:10:48 +00:00
pybrain Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
pycdf - Strip library 2015-06-03 16:51:58 +00:00
pynn Cleanup plist 2014-11-12 18:48:53 +00:00
pyteomics - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
pyteomics.biolccc - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster - Update to 0.2-7 2015-06-13 05:45:48 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 1.1.67 2015-06-13 06:04:57 +00:00
R-cran-epicalc
R-cran-snow
R-cran-som
rubygem-ai4r - Add LICENSE 2015-05-24 15:36:08 +00:00
rubygem-cdo - Update to 1.2.5 2015-06-05 18:57:21 +00:00
rubygem-ruby-dcl science/rubygem-ruby-dcl: Fix category. 2015-03-09 17:36:19 +00:00
rubygem-ruby-netcdf - Move science/rubygem-netcdf to science/rubygem-ruby-netcdf 2015-05-24 15:35:51 +00:00
sigrok-cli
sigrok-firmware Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
sigrok-firmware-fx2lafw cleanup plist 2014-12-20 19:35:10 +00:00
sigrok-firmware-utils Switch default python3 version from 3.3 to 3.4. 2015-01-10 23:15:27 +00:00
silo - Update to 1.8.15 2015-05-24 08:10:28 +00:00
simlib - Strip library 2015-05-17 14:43:37 +00:00
simsmith MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
step Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
svmlight - Add LICENSE 2015-03-07 03:18:42 +00:00
szip - Use LIBS 2015-02-18 16:19:52 +00:00
udunits - Update to 2.2.19 2015-04-03 17:28:32 +00:00
v_sim Upgrade to 3.7.2. 2014-12-22 14:36:52 +00:00
veusz - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
vmd 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
voro++ Cleanup plist 2014-11-12 18:48:53 +00:00
xfce4-equake-plugin MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
xmakemol cleanup plist 2014-12-20 19:35:10 +00:00
Makefile scikits-sparse is a Python module for sparse matrix calculations. 2015-06-14 12:39:04 +00:00