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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-18 00:10:04 +00:00
freebsd-ports/science
Po-Chuan Hsieh ef7f86fdc9
science/py-tobler: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:07:07 +08:00
..
2d-rewriter
abinit science/abinit: update 10.0.3 → 10.0.5 2024-05-02 01:57:59 -07:00
afni science/afni: update to 24.1.11 2024-05-12 18:07:29 +02:00
agrum science/agrum: update 1.12.1 → 1.13.1 2024-04-21 12:42:25 -07:00
aircraft-datcom
ALPSCore
antioch
apbs
arbor
ascent
atompaw
avogadro2
avogadrolibs
axom
bagel
bddsolve
berkeleygw
bodr
bout++
bout++-merging-filaments
buddy
cantera
cardioid
cdf
cdk
cdo graphics/proj: Update to 9.4.0 2024-04-15 06:44:23 +02:00
cgnslib
cgribex science/cgribex: Update to 2.0.0 2024-04-10 15:19:33 +08:00
checkmol
chemical-mime-data
chemicalfun
chemps2
chemtool
chemtool-devel */*: Remove GNU_CONFIGURE_MANPREFIX after move man pages to share/man 2024-04-14 10:41:16 +01:00
chimes-calculator
ChipmunkPhysics
chrono
cif-tools
clhep
clipper
code_saturne
colt
conduit science/conduit: update 0.8.8 → 0.9.1 2024-04-05 02:15:39 -07:00
coordgenlibs
cp2k
cp2k-data
csvtk all: Bump after lang/go121 update 2024-04-15 08:20:04 +00:00
dakota
dalton
dd_package
devisor
dftbplus
dftd3
dftd4 science/{,py-}dftd4: update 3.5.0 → 3.6.0 2024-04-21 15:18:41 -07:00
dimod
dirac science/dirac: Broken on i386 2024-04-27 00:53:00 -07:00
dkh
dlib-cpp
drawxtl
dssp
dvc
dwave-preprocessing
dynare */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
eccodes science/eccodes: Update to 2.35.0 2024-04-13 17:31:34 +08:00
elk science/elk: update 9.5.1 → 9.5.14 2024-04-14 12:07:34 -07:00
elmerfem graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet
feff10
fleur
frontistr
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib
gchemutils
gcp
gdma
geant4 devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
gemmi
getdp
ghemical
ghmm
gnudatalanguage graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
gpaw-setups
gramps science/gramps: Update to 5.2.2 2024-04-07 08:47:46 +01:00
grib_api
gromacs science/gromacs: update 2024.1 → 2024.2 2024-05-12 01:06:49 -07:00
gsmc
gtamsanalyzer
h5utils science/h5utils: Drop USES=autoreconf 2024-04-14 13:03:19 +01:00
h5z-zfp
harminv
hdf
hdf5
hdf5-18
hdf5-110
healpix
helfem
hepmc3 science/hepmc3: update 3.2.6 → 3.2.7 2024-04-21 15:17:18 -07:00
highfive
hypre
iboview
InsightToolkit science/InsightToolkit: Fix build with CMake 3.29 2024-05-07 05:05:20 -04:00
InsightToolkit501 graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
isaac-cfd
jdftx
jmol
jstrack
kalzium
kim-api
kplib science/kplib: Fix build by removing -Werror promoting a warrning to an error 2024-04-11 01:17:15 -07:00
kst2 graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
lammps graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
lamprop
latte
libaec science/libaec: Do not build testing unconditionally 2024-04-06 08:00:10 +08:00
libccp4
libcifpp
libcint
libctl
libecpint
libefp
libgetar
libghemical
libgridxc
libint
libint2
libint2-psi4
libkml
liblinear
libmbd
libmsym
libnegf
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
linux-zotero
luscus
m-aneos
madness
maeparser
massxpert
mbdyn */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
mcpl
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
mercantile
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif all: Bump after lang/go121 update 2024-04-15 08:20:04 +00:00
molscript
molsketch
mopac
mp2d
mpb
mpqc
mrchem
mrcpp
msms
mstore
multicharge
multiwfn science/multiwfn: Fix build failure due to missing makefile dependency 2024-05-06 12:28:15 -07:00
mutationpp
namd
ncrystal
nest science/nest: update 3.5 → 3.7 2024-04-15 21:15:49 -07:00
netcdf */*: Remove GNU_CONFIGURE_MANPREFIX=${PREFIX}/share after 9fd7ee1cdf 2024-04-13 21:03:19 +08:00
netcdf-cxx
netcdf-fortran science/netcdf-fortran: Update to 4.6.1 2024-04-18 20:48:10 +08:00
nifticlib
nlcglib devel/kokkos: update 4.1.00 → 4.3.00 2024-04-21 11:28:27 -07:00
nwchem */*: clean up after swith to cmake:indirect 2024-04-11 12:27:00 +03:00
nwchem-data science/nwchem-data: update 7.2.0 → 7.2.2 2024-04-12 17:17:24 -07:00
ocean science/ocean: Fix build by adding MAKE_JOBS_UNSAFE 2024-04-07 12:17:13 -07:00
octopus graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
openbabel
openems
openkim-models
openmc science/openmc: update 0.13.3 → 0.14.0 2024-04-06 01:34:42 -07:00
openmodelica science/openmodelica: update 1.22.2 → 1.22.3 2024-04-06 07:54:51 -07:00
openmolcas
openmx
opensim-core
opensph devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
opsin
optench
orthanc science/orthanc: update 1.11.0 → 1.12.3 2024-05-05 23:12:53 -07:00
orthanc-dicomweb
orthanc-mysql
orthanc-postgresql
orthanc-webviewer
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Calc
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-Coordinates-Transform
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
paje
paraview graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
pastix
pcmsolver
PETSc science/PETSc: update 3.21.0 → 3.21.1 2024-04-27 00:53:00 -07:00
phonopy science/{,py-}phonopy: update 2.23.0 → 2.23.1 2024-05-04 01:27:25 -07:00
plumed
pnetcdf */*: Remove GNU_CONFIGURE_MANPREFIX=${PREFIX}/share after 9fd7ee1cdf 2024-04-13 21:03:19 +08:00
polytope
precice
psi4
pulseview
py-abipy
py-access science/py-access: Convert to USE_PYTHON=pep517 2024-05-13 22:06:37 +08:00
py-arbor
py-arch
py-asap3
py-asdf science/py-asdf: Convert to USE_PYTHON=pytest 2024-04-09 04:17:28 +08:00
py-asdf-standard
py-asdf-transform-schemas
py-ase
py-atomium
py-avogadrolibs
py-boutdata
py-boututils
py-cdo science/py-cdo: Convert to USE_PYTHON=pep517 2024-05-13 22:06:39 +08:00
py-cfgrib science/py-cfgrib: Update to 0.9.11.0 2024-04-08 14:46:53 +08:00
py-chainer
py-chainer-chemistry
py-chempy science/py-chempy: update 0.8.3 → 0.9.0 2024-04-25 07:52:09 -07:00
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti
py-coards science/py-coards: Convert to USE_PYTHON=pep517 2024-05-13 22:06:41 +08:00
py-DendroPy
py-dftbplus
py-dftd4 science/{,py-}dftd4: update 3.5.0 → 3.6.0 2024-04-21 15:18:41 -07:00
py-dimod
py-dipy science/py-dipy: update 1.8.0 → 1.9.0 2024-04-22 01:25:11 -07:00
py-dlib */*: convert to cmake:indirect 2024-04-11 12:16:53 +03:00
py-dwave-cloud-client devel/py-python-dateutil: Move devel/py-dateutil to devel/py-python-dateutil 2024-04-13 22:47:51 +08:00
py-dwave-greedy
py-dwave-hybrid
py-dwave-inspector
py-dwave-neal
py-dwave-networkx
py-dwave-ocean-sdk
py-dwave-preprocessing
py-dwave-samplers
py-dwave-system
py-dwave-tabu
py-dwavebinarycsp
py-earthpy
py-eccodes science/py-eccodes: Convert to USE_PYTHON=pep517 2024-05-13 22:06:42 +08:00
py-emmet-core
py-esda
py-fresnel devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
py-gemmi
py-geolinks science/py-geolinks: Convert to USE_PYTHON=pep517 2024-05-13 22:06:44 +08:00
py-geomet
py-geometer science/py-geometer: Convert to USE_PYTHON=pep517 2024-05-13 22:06:46 +08:00
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd
py-h5json
py-h5py science/py-h5py: Update to 3.11.0 2024-04-13 17:31:41 +08:00
py-h5pyd science/py-h5pyd: New port: h5py compatible client lib for HDF REST API 2024-04-07 11:37:59 -07:00
py-HepMC3
py-hiphive
py-HofstadterTools science/py-HofstadterTools: New port: Package for analyzing the Hofstadter model of particles in the lattice 2024-04-19 12:28:24 -07:00
py-hoomd-blue devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
py-inequality
py-ipygany
py-jupyter_jsmol
py-kim-query
py-kimpy
py-kinematics science/py-kinematics: Convert to USE_PYTHON=pep517 2024-05-13 22:06:47 +08:00
py-kliff
py-kpLib
py-liac-arff science/py-liac-arff: Convert to USE_PYTHON=pep517 2024-05-13 22:06:49 +08:00
py-libgetar
py-libpysal
py-lifelines
py-MDAnalysis science/py-MDAnalysis{,Tests}: update 2.3.0 → 2.7.0 2024-05-06 14:06:15 -07:00
py-MDAnalysisTests science/py-MDAnalysis{,Tests}: update 2.3.0 → 2.7.0 2024-05-06 14:06:15 -07:00
py-mdp
py-meshio
py-mmcif
py-mmtf-python
py-molmod
py-moltemplate
py-mp-api
py-mpcontribs-client
py-mrchem
py-ncrystal
py-netCDF4
py-netcdf-flattener science/py-netcdf-flattener: Convert to USE_PYTHON=pep517 2024-05-13 22:06:50 +08:00
py-nglview science/py-nglview: update 3.0.7 → 3.1.2 2024-04-20 01:34:04 -07:00
py-nibabel science/py-nibabel: update 5.2.0 → 5.2.1 2024-04-14 12:07:37 -07:00
py-nilearn
py-obspy science/py-obspy: Update to 1.4.1 2024-05-06 08:53:04 +00:00
py-oddt
py-openbabel
py-OpenFermion science/py-OpenFermion: update 1.6.0 → 1.6.1 2024-04-27 00:52:59 -07:00
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC science/py-OpenMC: update 0.13.3 → 0.14.0 2024-04-06 01:34:42 -07:00
py-openpiv
py-optking
py-paida
py-paramz
py-penaltymodel
py-periodictable science/py-periodictable: New port: Extensible periodic table of the elements pre-populated with data 2024-05-04 10:16:06 -07:00
py-phono3py
py-phonopy science/{,py-}phonopy: update 2.23.0 → 2.23.1 2024-05-04 01:27:25 -07:00
py-PubChemPy
py-pupynere science/py-pupynere: Convert to USE_PYTHON=pep517 2024-05-13 22:06:52 +08:00
py-py3Dmol
py-pyaixi science/py-pyaixi: Convert to USE_PYTHON=pep517 2024-05-13 22:06:54 +08:00
py-pyberny
py-pycsw science/py-pycsw: Convert to USE_PYTHON=pep517 2024-05-13 22:06:55 +08:00
py-pydicom
py-PyFR
py-pygeodesy science/py-pygeodesy: Convert to USE_PYTHON=pep517 2024-05-13 22:06:57 +08:00
py-pygeometa science/py-pygeometa: Convert to USE_PYTHON=pep517 2024-05-13 22:06:59 +08:00
py-pygmo2
py-pyked
py-pymatgen
py-pymatgen-analysis-alloys
py-pymbd
py-pymol
py-PyNE science/py-PyNE: Fix build broken by MOAB update 2024-05-05 13:48:56 -07:00
py-pyosf
py-pyprecice
py-pyqubo
py-pysal science/py-pysal: Convert to USE_PYTHON=pep517 2024-05-13 22:07:01 +08:00
py-pyscf
py-pyteomics
py-qcelemental
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize science/py-scikit-optimize: Convert to USE_PYTHON=pep517 2024-05-13 22:07:02 +08:00
py-scikit-sparse */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
py-scimath
py-scipy
py-scoria
py-sdf
py-segregation science/py-segregation: Remove PY_SETUPTOOLS 2024-04-08 14:46:54 +08:00
py-segyio science/{,py-}segyio: update 1.9.11 → 1.9.12 2024-04-08 00:31:00 -07:00
py-signac
py-SimpleSpectral
py-sklearn-pandas science/py-sklearn-pandas: Convert to USE_PYTHON=pep517 2024-05-13 22:07:04 +08:00
py-skrebate science/py-skrebate: Convert to USE_PYTHON=pep517 2024-05-13 22:07:06 +08:00
py-spaghetti science/py-spaghetti: Remove PY_SETUPTOOLS 2024-04-08 14:46:56 +08:00
py-spglib science/{,py-}spglib: update 2.3.1 → 2.4.0 2024-04-11 21:33:44 -07:00
py-tensorflow
py-thewalrus
py-tobler science/py-tobler: Convert to USE_PYTHON=pep517 2024-05-13 22:07:07 +08:00
py-trainstation
py-trx-python
py-tweedledum
py-vedo
py-veusz
py-xbout
pybrain
pynn science/pynn: Update to 0.12.3 2024-05-08 10:27:21 +00:00
q
qbox
qcl
qiskit-aer
qmcpack
qt6-quick3dphysics
quantum-espresso science/quantum-espresso: Broken on aarch64 2024-05-12 12:03:50 -07:00
quantum-espresso-pseudopotentials
quantum-jet
qwalk
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4 graphics/proj: Update to 9.4.0 2024-04-15 06:44:23 +02:00
rubygem-rgeo-shapefile
rubygem-ruby-netcdf
salome-configuration
salome-kernel
scidavis
sciplot
segyio science/{,py-}segyio: update 1.9.11 → 1.9.12 2024-04-08 00:31:00 -07:00
serac
shelxle science/shelxle: update 1.0.1636 → 1.0.1638 2024-04-25 23:15:15 -07:00
siconos */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid
simint
simlib
simple-dftd3
simsmith
sirius
smoldyn graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
sparta
spglib science/{,py-}spglib: update 2.3.1 → 2.4.0 2024-04-11 21:33:44 -07:00
spheral science/spheral: update 2024.01.0 → 2024.01.1 2024-04-08 09:57:53 -07:00
step
tblite
teem
tfel
tfel-edf
thermofun science/thermofun: update 0.4.4 → 0.4.5 2024-04-27 00:52:59 -07:00
tinker science/tinker: Release was re-rolled as confirmed by the upstream 2024-05-08 13:17:04 -07:00
trilinos */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
ttk science/ttk: Attempt to fix build by adding the searched depency package fast_float 2024-04-08 12:18:41 -07:00
tweedledum
udunits
ukrmol+
v_sim
vipster
vmd
voro++
votca
wannier90
wwplot science/wwplot: update 0.0.9 → 1.0.0 2024-04-19 12:28:22 -07:00
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb
yoda
zotero
zx
Makefile science/py-periodictable: New port: Extensible periodic table of the elements pre-populated with data 2024-05-04 10:16:06 -07:00