| .. |
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
mark some of the ports that don't build on powerpc64 for me
|
2015-12-13 16:07:27 +00:00 |
|
babel
|
|
|
|
bcftools
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
bedtools
|
The bedtools utilities are a suite of tools for performing a wide range of
|
2016-01-19 08:56:34 +00:00 |
|
biococoa
|
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
|
2015-09-19 10:33:34 +00:00 |
|
biojava
|
|
|
|
blat
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
bowtie
|
New port: biology/bowtie.
|
2016-03-05 13:21:26 +00:00 |
|
bowtie2
|
New port: biology/bowtie2.
|
2016-03-23 11:22:39 +00:00 |
|
bwa
|
mark some of the ports that don't build on powerpc64 for me
|
2015-12-13 16:07:27 +00:00 |
|
cd-hit
|
- Update maintainer mail address
|
2015-12-11 08:48:56 +00:00 |
|
cdbfasta
|
- Update maintainer mail address
|
2015-12-11 08:48:56 +00:00 |
|
chemeq
|
- Add LICENSE
|
2016-04-10 11:24:32 +00:00 |
|
clustalw
|
|
|
|
consed
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
crux
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
emboss
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
fasta
|
|
|
|
fasta3
|
- Update to 36.3.8
|
2015-10-16 13:31:10 +00:00 |
|
fastdnaml
|
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
|
2016-01-12 16:20:31 +00:00 |
|
fastool
|
- Update maintainer mail address
|
2015-12-11 08:48:56 +00:00 |
|
fasttree
|
- Update maintainer mail address
|
2015-12-11 08:48:56 +00:00 |
|
fastx-toolkit
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
fluctuate
|
- Switch to options helpers
|
2015-11-19 00:51:15 +00:00 |
|
garlic
|
|
|
|
gff2ps
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
gmap
|
mark some of the ports that don't build on powerpc64 for me
|
2015-12-13 16:07:27 +00:00 |
|
gperiodic
|
|
|
|
grappa
|
biology/grappa: define license (GPLv2)
|
2015-09-25 18:55:08 +00:00 |
|
hmmer
|
- Update maintainer mail address
|
2015-12-11 08:48:56 +00:00 |
|
htslib
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
iolib
|
- Update to 1.14.8
|
2016-05-01 01:03:48 +00:00 |
|
jalview
|
|
|
|
jellyfish
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
lagan
|
Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRS
|
2016-01-09 18:26:40 +00:00 |
|
lamarc
|
Cleanup GH_* and variables order.
|
2015-12-29 14:30:46 +00:00 |
|
libgtextutils
|
Cleanup GH_* and variables order.
|
2015-12-29 14:30:46 +00:00 |
|
libsbml
|
Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:
|
2016-04-16 01:54:15 +00:00 |
|
linux-foldingathome
|
|
|
|
mafft
|
- Update to 7.266
|
2015-12-25 07:19:00 +00:00 |
|
mapm3
|
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS
|
2016-02-01 22:09:10 +00:00 |
|
migrate
|
- Switch to options helpers
|
2016-04-17 10:15:59 +00:00 |
|
molden
|
biology/molden: updated distfile, take maintainer
|
2016-01-20 19:31:52 +00:00 |
|
mopac
|
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
|
2016-01-12 16:20:31 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
|
|
|
muscle
|
mark some of the ports that don't build on powerpc64 for me
|
2015-12-13 16:07:27 +00:00 |
|
ncbi-blast+
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
ncbi-toolkit
|
|
|
|
p5-AcePerl
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-Das
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-Das-Lite
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-GFF3
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-Glite
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-Graphics
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-MAGETAB
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-NEXUS
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-Phylo
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-Bio-SCF
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-bioperl
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-bioperl-run
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
p5-transdecoder
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
paml
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
phyml
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
platon
|
- Mark BROKEN: checksum mismatch:
|
2015-11-29 03:13:34 +00:00 |
|
plink
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
plinkseq
|
many ports: mark broken on powerpc64
|
2016-04-21 16:43:14 +00:00 |
|
primer3
|
|
|
|
protomol
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
psi88
|
- Switch to options helpers
|
2016-04-16 06:38:23 +00:00 |
|
py-biopython
|
- Update to 1.66
|
2016-04-17 03:55:01 +00:00 |
|
pycogent
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
pyfasta
|
|
|
|
python-nexus
|
- Update to 1.34
|
2016-02-12 13:18:37 +00:00 |
|
recombine
|
|
|
|
ruby-bio
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
samtools
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
seaview
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
seqan
|
|
|
|
seqio
|
|
|
|
seqtools
|
biology/seqtools: 4.41.1 -> 4.42.1
|
2016-04-22 16:27:25 +00:00 |
|
sim4
|
|
|
|
slclust
|
New port: biology/slclust.
|
2016-03-23 11:00:44 +00:00 |
|
ssaha
|
|
|
|
t_coffee
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
|
tinker
|
|
|
|
treepuzzle
|
|
|
|
treeviewx
|
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
|
2016-01-12 16:20:31 +00:00 |
|
trimmomatic
|
Trimmomatic performs a variety of useful trimming tasks for illumina
|
2016-03-17 08:21:14 +00:00 |
|
tRNAscan-SE
|
|
|
|
ugene
|
Update to version 1.22.0, which now unfortunately requires Qt 5.x. Also
|
2016-04-14 04:07:44 +00:00 |
|
vcftools
|
New port: biology/vcftools.
|
2016-02-26 17:07:59 +00:00 |
|
velvet
|
|
|
|
wise
|
|
|
|
xmolwt
|
|
|
|
Makefile
|
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
|
2016-03-24 13:53:06 +00:00 |
