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3be3e90f93
- Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery)
27 lines
707 B
Makefile
27 lines
707 B
Makefile
# Created by: Wen Heping <wenheping@gmail.com>
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# $FreeBSD$
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PORTNAME= pycogent
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PORTVERSION= 1.5.3
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PORTREVISION= 1
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CATEGORIES= biology python
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MASTER_SITES= SF/${PORTNAME}/PyCogent/${PORTVERSION}
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DISTNAME= PyCogent-${PORTVERSION}
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EXTRACT_SUFX= .tgz
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MAINTAINER= wen@FreeBSD.org
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COMMENT= A toolkit for statistical analysis of biological sequences
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BUILD_DEPENDS= ${PYNUMPY} \
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${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \
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${LOCALBASE}/bin/sphinx-build:${PORTSDIR}/textproc/py-sphinx \
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${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:${PORTSDIR}/databases/py-sqlalchemy06
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RUN_DEPENDS:= ${BUILD_DEPENDS}
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USE_PYTHON= yes
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USE_PYDISTUTILS= yes
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PYDISTUTILS_PKGNAME= cogent
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NO_STAGE= yes
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.include <bsd.port.mk>
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