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freebsd-ports/biology
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Edwin Groothuis 191d7dac5e update biology/babel to properly output mm3 files. 
PR:		ports/42425
Submitted by:	Glenn Johnson <glennpj@charter.net>
2003-01-03 08:52:41 +00:00
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artemis
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avida
Make biology/avida building on -current again
2002-11-03 23:40:02 +00:00
babel
update biology/babel to properly output mm3 files.
2003-01-03 08:52:41 +00:00
biojava
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chemeq
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clustalw
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coalesce
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crimap
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deft
PERL -> REINPLACE
2002-11-04 05:46:38 +00:00
distribfold
Fix typo: distribfold.org -> distributedfolding.org
2002-12-19 18:33:55 +00:00
dna-qc
PERL -> REINPLACE
2002-11-04 05:46:38 +00:00
emboss
- Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)
2002-09-27 08:58:19 +00:00
fasta
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fasta3
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fastdnaml
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flip
PERL -> REINPLACE
2002-11-04 05:46:38 +00:00
fluctuate
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gaussian98
Remove USE_NEWGCC, which is no longer supported or required.
2002-08-31 02:38:29 +00:00
genpak
o Rollback PORTCOMMENT modifications while this feature's implementation
2002-11-10 16:48:51 +00:00
gff2ps
PERL -> REINPLACE
2002-11-04 01:56:21 +00:00
gperiodic
Deploy USE_GNOMENG infrastructure
2002-08-30 12:59:40 +00:00
grappa
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hmmer
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kinemage
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L-Breeder
Mark BROKEN due to "Unknown problem"
2002-11-25 02:11:13 +00:00
lamarc
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libgenome
add missing include
2002-12-29 04:44:13 +00:00
migrate
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molden
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mopac
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nab
PERL -> REINPLACE
2002-11-04 01:56:21 +00:00
ncbi-toolkit
add forgotten "USE_REINPLACE=yes"
2002-09-21 14:56:18 +00:00
nclever
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ortep3
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p5-AcePerl
CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in
2002-10-10 12:59:36 +00:00
p5-bioperl
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p5-bioperl-devel
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paml
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phylip
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pkg
…
platon
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povchem
PERL -> REINPLACE
2002-11-04 02:35:01 +00:00
primer3
Updated to fix problems as stated in PR ports/42915
2002-11-07 13:45:17 +00:00
psi88
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py-biopython
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pymol
1. add a missing dependency on png and unbreak.
2002-11-19 23:01:49 +00:00
rasmol
o Rollback PORTCOMMENT modifications while this feature's implementation
2002-11-10 16:48:51 +00:00
recombine
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ruby-bio
Use RUBY_MOD*.
2002-10-06 21:08:30 +00:00
seaview
unbroke by upgrade to 20021018
2002-11-20 14:03:25 +00:00
seqio
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sim4
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spdbv
upgrade to 3.7
2003-01-02 03:57:58 +00:00
t_coffee
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tinker
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treepuzzle
add treepuzzle 5.1
2002-11-20 08:54:10 +00:00
treeviewx
Chase new name of wxgtk shared library.
2002-09-09 14:21:08 +00:00
tRNAscan-SE
Port needs perl to build.
2002-11-04 01:47:57 +00:00
wise
Modify replace RE to match syntax of sed now ("\)" -> ")"
2002-11-05 01:44:12 +00:00
xdrawchem
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xmolwt
Deploy USE_GNOMENG infrastructure
2002-08-30 12:59:40 +00:00
Makefile
add treepuzzle 5.1
2002-11-20 08:54:10 +00:00