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freebsd-ports/science
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Andrej Zverev 325c9808b6 - convert to the new perl5 framework 
- convert USE_GMAKE to Uses

Approved by:	portmgr (bapt@, blanket)
2013-09-16 10:58:05 +00:00
..
2d-rewriter Convert to USES=imake 2013-06-28 22:25:57 +00:00
2dhf
abinit - convert to the new perl5 framework 2013-09-16 10:58:05 +00:00
afni Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
avogadro - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
bddsolve Remove USE_GCC. 2013-09-14 19:13:46 +00:00
bft
bodr - Convert to new perl framework 2013-08-03 13:44:00 +00:00
brian - Update to 1.4.1 2013-07-23 03:19:47 +00:00
buddy
cdcl Add an explicit dependency on pkgconf 2013-09-05 05:28:24 +00:00
cdf
cdo - Update to 1.6.1 2013-08-29 18:35:35 +00:00
cgnslib Downgrade to 3.1.4. 2013-07-10 13:40:57 +00:00
checkmol - worked with upstream to roll versioned source distfile 2013-06-01 05:10:39 +00:00
chemical-mime-data Add an explicit dependency on pkgconf 2013-09-02 22:23:53 +00:00
chemtool Add an explicit dependency on pkgconf 2013-09-06 13:01:53 +00:00
chemtool-devel Add an explicit dependency on pkgconf 2013-09-06 13:01:53 +00:00
clhep - convert to the new perl5 framework 2013-09-16 10:58:05 +00:00
colt
crf++
dcl Add an explicit dependency on pkgconf 2013-09-09 18:54:28 +00:00
devisor Convert NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:59:24 +00:00
dlpoly-classic Convert science to new options framework 2013-04-28 22:08:22 +00:00
dtiquery
ecs WITHOUT_NLS -> PORT_OPTIONS:MNLS 2013-06-04 14:40:29 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte
euler Add an explicit dependency on pkgconf 2013-09-02 21:27:53 +00:00
fastcap - Tighten Makefile header and COMMENT 2013-07-28 09:46:15 +00:00
fasthenry update to 3.0wr-021113 2013-03-28 01:06:02 +00:00
felt - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
flounder - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
fvcom
fvcom-mpi
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data Add explicit dependency on pkgconf (27 ports) 2013-09-12 00:21:10 +00:00
gamess update to 2012/5/1 R2 version. 2013-03-05 11:43:18 +00:00
gchemutils Add explicit dependency on pkgconf (18 ports) 2013-09-12 09:07:08 +00:00
gdis Add an explicit dependency on pkgconf 2013-09-09 18:54:28 +00:00
getdp Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
ghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
ghmm
gnudatalanguage - do not use local bsd.python.mk variables within the port Makefile - switch 2013-08-30 16:49:43 +00:00
gramps gramps installs a .desktop file with a MimeType and registers Mime types 2013-06-24 22:02:02 +00:00
gromacs Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
gsmc Add an explicit dependency on pkgconf 2013-09-10 21:31:33 +00:00
gtamsanalyzer . portlint: remove whitespace before end of line; 2013-06-20 13:06:02 +00:00
gwyddion Add an explicit dependency on pkgconf 2013-09-02 22:58:16 +00:00
h5utils
harminv Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
hdf - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
hdf5 science/hdf5: Remove h5perf that is missing shared library 2013-07-22 18:17:31 +00:00
hdf5-18 - Update to 1.8.10 patch 1 2013-08-31 08:01:25 +00:00
hdf-java . remove shlib ABI version numbers from LIB_DEPENDS; 2013-06-20 13:25:04 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.6.3 2013-06-04 18:53:40 +00:00
InsightToolkit Readd specific EXAMPLES description because of specific comment in it 2013-04-29 05:39:52 +00:00
isaac-cfd . introduce optionsNG; 2013-06-20 16:19:43 +00:00
jmol - Use single space after WWW: 2013-09-07 17:20:21 +00:00
jstrack
kalzium Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
kst2 Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
lamprop - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
libctl Update to 3.2.1 2013-09-03 17:05:11 +00:00
libghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
libint - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
libkml
liblinear Convert science to new options framework 2013-04-28 22:08:22 +00:00
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm Convert science to new options framework 2013-04-28 22:08:22 +00:00
libsvm-python
linsmith Add an explicit dependency on pkgconf 2013-09-03 12:13:23 +00:00
massxpert - Changed my email 2013-07-22 14:34:22 +00:00
mayavi . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 14:05:24 +00:00
mbdyn Convert science to new options framework 2013-04-28 22:08:22 +00:00
mcstas - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
medit Fix build with clang. 2013-06-12 20:03:25 +00:00
meep Update to 1.2 2013-09-03 17:06:48 +00:00
mei
minc
minc2 science/minc2: Switch license to BSD 2013-08-22 23:55:13 +00:00
mol2ps - Update to 0.4a 2013-07-22 15:28:03 +00:00
mpb . add license (GPLv2); 2013-06-20 13:35:33 +00:00
mpqc - convert to the new perl5 framework 2013-09-16 10:58:05 +00:00
mpqc-mpich
ncs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
netcdf Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf3-ftn - Cleanup Makefile header 2013-08-21 17:42:57 +00:00
netcdf4 - Add missing tab in USES=pathfix 2013-08-21 12:08:40 +00:00
netcdf-ftn - Cleanup Makefile header 2013-08-21 17:42:57 +00:00
nifticlib - Try to unbreak parallel builds (-jX) 2013-07-28 08:32:18 +00:00
omnetpp Convert USE_GNOME=pkgconfig to USES=pkgconfig 2013-08-31 00:12:37 +00:00
openbabel - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
ovt
p5-Algorithm-SVMLight - Use single space after WWW: 2013-08-29 04:08:53 +00:00
p5-Chemistry-3DBuilder - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Bond-Find - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Canonicalize - convert to the new perl5 framework 2013-09-10 09:39:11 +00:00
p5-Chemistry-Elements - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Chemistry-File-MDLMol - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-Mopac - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-PDB - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-SLN - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-SMARTS - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-SMILES - convert to the new perl5 framework 2013-09-10 07:55:33 +00:00
p5-Chemistry-File-VRML - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-XYZ - convert to the new perl5 framework 2013-09-10 09:39:11 +00:00
p5-Chemistry-FormulaPattern - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-InternalCoords - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Isotope - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-MacroMol - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Chemistry-MidasPattern - convert to the new perl5 framework 2013-09-10 09:39:11 +00:00
p5-Chemistry-Mok - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Mol - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Chemistry-Pattern - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Reaction - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Ring - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Geo-BUFR - Update to 1.25 2013-09-14 07:19:23 +00:00
p5-Geo-Coordinates-Converter - Use single space after WWW: 2013-08-29 04:08:53 +00:00
p5-Geo-Coordinates-Converter-iArea - Cleanup Makefile header 2013-08-21 17:42:57 +00:00
p5-Geo-ReadGRIB - Convert to new perl framework 2013-08-06 08:50:49 +00:00
p5-Geo-WebService-Elevation-USGS - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-PerlMol - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Physics-Unit - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
paje . portlint: use tab (not space) to make indentation; 2013-06-20 13:43:03 +00:00
paraview - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
peekabot Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
pnetcdf - Remove leading indefinite article from COMMENT 2013-08-21 17:17:25 +00:00
psi3
psychopy - Update to 1.77.00 2013-05-16 13:04:09 +00:00
py-coards Clean up. 2013-06-16 08:29:46 +00:00
py-DendroPy
py-h5py science/py-h5py: Add OPTION support for HDF5 1.8 2013-08-13 11:59:54 +00:00
py-hcluster
py-mdp
py-mlpy Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
py-netCDF4 - Update to 1.0.5 2013-08-21 02:49:33 +00:00
py-obspy - Update COMMENT and pkg-descr 2013-07-18 23:56:55 +00:00
py-paida - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
py-pupynere science/py-pupynere: Module for reading and writing NetCDF files [NEW PORT] 2013-09-02 11:27:42 +00:00
py-pydicom
py-scikit-learn Update to version 0.13.1. 2013-03-11 14:11:26 +00:00
py-scimath - Update to 4.1.2 2013-07-23 04:27:27 +00:00
py-scipy - Take maintainership 2013-08-21 01:03:00 +00:00
py-ws2300
pybrain
pycdf
pynn - Update to 0.7.5 2013-03-02 05:49:40 +00:00
pyteomics - Update to 2.1.5 and [1]: 2013-05-11 07:42:20 +00:00
pyteomics.biolccc Allow to build with python3 2013-05-11 07:41:46 +00:00
qcl
qtresistors - Changed my email 2013-07-22 14:34:22 +00:00
R-cran-AMORE Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-bayesm Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-DCluster Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-e1071 Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-eco Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-Epi Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-epicalc Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-snow Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-som Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf - Use single space after WWW: 2013-08-29 04:10:37 +00:00
rubygem-ai4r - Reset maintainer after no response to mail since Jan 2013 2013-07-27 16:06:01 +00:00
silo - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
simlib
step Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
svmlight
szip . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 13:01:27 +00:00
udunits - Convert to new LIB_DEPENDS format 2013-09-01 15:33:46 +00:00
v_sim Add explicit dependency on pkgconf (27 ports) 2013-09-12 00:21:10 +00:00
veusz - Update to 1.17.1 2013-06-19 13:53:12 +00:00
vmd - convert to the new perl5 framework 2013-09-16 10:58:05 +00:00
voro++ - add new port: science/voro++ 2013-04-16 22:46:18 +00:00
x11iraf
xfce4-equake-plugin - Update to 1.3.3 2013-09-11 15:04:45 +00:00
xmakemol Convert from USE_MOTIF to USES=motif 2013-07-10 07:00:44 +00:00
xmds Convert science to new options framework 2013-04-28 22:08:22 +00:00
Makefile science/py-pupynere: Module for reading and writing NetCDF files [NEW PORT] 2013-09-02 11:27:42 +00:00