freebsd-ports

ariadne

…

artemis

Support stage

2014-01-20 23:06:48 +00:00

avida

…

babel

…

biococoa

…

biojava

- add stage support

2014-06-01 10:37:22 +00:00

blast

Multiple ports: reset maintainers

2014-05-26 02:33:38 +00:00

blat

Convert b* to USES=zip

2014-03-07 15:52:40 +00:00

boinc-simap

Drop maintainership BOINC ports, old machine running them gave up.

2014-02-04 17:54:29 +00:00

chemeq

Stage support

2014-01-18 15:55:42 +00:00

clustalw

Multiple ports: reset maintainers

2014-05-26 02:33:38 +00:00

consed

Replace maintainer's email address with one that seems to work

2014-05-10 18:07:52 +00:00

crux

Update the default version of GCC used in the Ports Collection from

2014-03-10 20:55:20 +00:00

embassy

biology/embassy: specify post-extraction with ${TAR}

2014-05-29 10:47:58 +00:00

emboss

- Update to 6.6.0

2014-06-05 03:28:06 +00:00

fasta

- Add staging support

2014-03-24 09:01:39 +00:00

fasta3

biology/fasta3: Checked new distfile and regenerated distinfo to unbreak

2014-03-02 10:58:50 +00:00

fastdnaml

Support staging

2014-02-16 11:32:43 +00:00

fluctuate

Support staging

2014-02-16 11:35:00 +00:00

garlic

- Convert USE_GMAKE to USES

2014-03-13 07:41:34 +00:00

gff2ps

Add staging support

2014-03-23 17:43:41 +00:00

gmap

…

gperiodic

Add staging support

2014-03-23 18:09:23 +00:00

grappa

…

hmmer

…

iolib

- I forgot to svn add a new patch

2014-05-31 18:03:08 +00:00

jalview

Fix properties on pkg-plist

2014-01-21 23:18:05 +00:00

lagan

…

lamarc

…

libsbml

- Update to 5.10.0

2014-05-13 07:04:17 +00:00

linux-foldingathome

…

mafft

Add DOCS and EXAMPLE options to biology/mafft

2014-05-31 04:18:18 +00:00

mapm3

…

migrate

- Stagify; cleanup Makefile and reorder the knobs a bit

2014-01-29 12:08:29 +00:00

molden

Catch a couple of missing convertsion to :tu/:tl

2014-05-05 11:15:53 +00:00

mopac

- Add staging support

2014-03-23 18:10:41 +00:00

mrbayes

…

mummer

- add stage support

2014-06-01 10:54:33 +00:00

muscle

- add stage support

2014-06-01 11:05:43 +00:00

ncbi-toolkit

Add staging support

2014-03-23 20:50:54 +00:00

njplot

- add stage support

2014-06-01 11:26:39 +00:00

ortep3

Update the default version of GCC used in the Ports Collection from

2014-03-10 20:55:20 +00:00

p5-AcePerl

- Stage support

2014-02-10 06:56:52 +00:00

p5-Bio-ASN1-EntrezGene

…

p5-Bio-Das

…

p5-Bio-Das-Lite

- fix pkg-plist

2014-01-30 07:34:25 +00:00

p5-Bio-GFF3

- Fix PLIST

2014-03-26 14:23:09 +00:00

p5-Bio-Glite

…

p5-Bio-Graphics

Mark as broken unstaged perl ports

2014-04-09 09:49:02 +00:00

p5-Bio-MAGETAB

- update to 1.31

2014-05-16 13:33:02 +00:00

p5-Bio-NEXUS

- Stage support

2014-01-31 12:47:06 +00:00

p5-Bio-Phylo

…

p5-Bio-SCF

…

p5-bioperl

- Update to 1.6.923

2014-05-30 15:46:05 +00:00

p5-bioperl-run

Remove trailing whitespaces from category biology

2014-02-21 13:35:26 +00:00

paml

- Update to 4.8

2014-04-05 10:56:52 +00:00

phd2fasta

Replace maintainer's email address with one that seems to work

2014-05-10 18:07:52 +00:00

phrap

Replace maintainer's email address with one that seems to work

2014-05-10 18:07:52 +00:00

phred

Replace maintainer's email address with one that seems to work

2014-05-10 18:07:52 +00:00

phylip

The FreeBSD x11@ and graphics team proudly presents

2014-04-16 18:28:47 +00:00

phyml

- Stage support

2014-01-31 12:32:55 +00:00

platon

Update the default version of GCC used in the Ports Collection from

2014-03-10 20:55:20 +00:00

plink

Update the default version of GCC used in the Ports Collection from

2014-03-10 20:55:20 +00:00

plinkseq

Convert to dos2unix

2014-03-07 11:37:35 +00:00

povchem

…

primer3

Quote ${CC} and similar variables in MAKE_ARGS.

2014-05-20 19:32:39 +00:00

protomol

The FreeBSD x11@ and graphics team proudly presents

2014-04-16 18:28:47 +00:00

psi88

Update the default version of GCC used in the Ports Collection from

2014-03-10 20:55:20 +00:00

py-biopython

- Stage

2014-04-27 01:59:47 +00:00

pycogent

- Stage support [1]

2014-05-02 14:00:13 +00:00

pyfasta

- Update to 0.5.2

2014-04-06 04:05:43 +00:00

pymol

The FreeBSD x11@ and graphics team proudly presents

2014-04-16 18:28:47 +00:00

python-nexus

- Convert to PYDISTUTILS_AUTOPLIST

2014-01-31 12:30:39 +00:00

recombine

- Support staging

2014-02-16 11:39:42 +00:00

ruby-bio

Support stage

2014-04-07 13:01:26 +00:00

seaview

- Update to 4.5.2

2014-06-04 06:28:56 +00:00

seqan

- add stage support

2014-06-01 11:42:17 +00:00

seqio

Support staging

2014-02-16 11:42:09 +00:00

seqtools

biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgrading

2014-05-02 19:00:04 +00:00

sim4

Support staging

2014-02-16 11:43:07 +00:00

ssaha

biology/ssaha: undeprecate, this port fetches and builds fine.

2014-03-09 09:39:50 +00:00

t_coffee

Update the default version of GCC used in the Ports Collection from

2014-03-10 20:55:20 +00:00

tinker

- Un-break fetch stage: the name scheme of the source tarballs has changed

2014-04-22 19:28:18 +00:00

treepuzzle

…

treeviewx

Unbreak

2014-06-04 20:08:15 +00:00

tRNAscan-SE

Support stage

2014-05-05 10:26:15 +00:00

ugene

Update to version 1.13.1.

2014-03-07 07:39:20 +00:00

velvet

- add stage support

2014-06-01 11:33:57 +00:00

wise

- Add staging support

2014-03-24 10:46:35 +00:00

xmolwt

Add staging support

2014-03-24 11:06:56 +00:00

Makefile

Remove expired ports:

2014-04-18 11:17:45 +00:00