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42 lines
1.1 KiB
Makefile
42 lines
1.1 KiB
Makefile
# $FreeBSD$
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PORTNAME= fastqc
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DISTVERSION= 0.11.8
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CATEGORIES= biology java perl5
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MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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DISTNAME= ${PORTNAME}_v${DISTVERSIONPREFIX}${DISTVERSION}
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Quality control tool for high throughput sequence data
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE.txt
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USES= zip perl5 shebangfix
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USE_JAVA= yes
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USE_PERL5= run
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SHEBANG_FILES= fastqc
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NO_ARCH= yes
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NO_BUILD= yes
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WRKSRC= ${WRKDIR}/FastQC
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post-patch:
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${REINPLACE_CMD} \
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-e 's|$$RealBin$$delimiter|${DATADIR}$$delimiter${JAVAJARDIR}/fastqc$$delimiter|g' \
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-e 's|$$RealBin/|${JAVAJARDIR}/fastqc/|g' \
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${WRKSRC}/fastqc
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# Help files are not optional docs, but required for Help menu functionality
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do-install:
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@${MKDIR} ${STAGEDIR}${JAVAJARDIR}/fastqc
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${INSTALL_DATA} ${WRKSRC}/*.jar ${STAGEDIR}${JAVAJARDIR}/fastqc
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${INSTALL_SCRIPT} ${WRKSRC}/fastqc ${STAGEDIR}${PREFIX}/bin
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cd ${WRKSRC} && ${COPYTREE_SHARE} "Configuration Help Templates" \
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${STAGEDIR}${DATADIR}
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cd ${WRKSRC} && ${COPYTREE_SHARE} "net org uk" \
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${STAGEDIR}${JAVAJARDIR}/fastqc
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.include <bsd.port.mk>
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