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c15562f6f7
freebsd-ports/biology
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Chris Rees f568ba617f - Use USERS and GROUPS 
- Use ${SH} instead of calling script directly

PR:		ports/157575
Submitted by:	Chris Rees (utisoft@gmail.com)
Approved by:	tabthorpe (co-mentor)
2011-06-27 17:50:37 +00:00
..
adun Update math/gsl to 1.15, and adjust PORTREVISION 2011-05-09 16:42:27 +00:00
ariadne - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
artemis - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
avida - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
babel - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
belvu - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
biococoa - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
biojava - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
blast - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
blat - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
boinc-simap - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
chemeq - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
clustalw - Fix fetch 2010-12-21 00:12:22 +00:00
consed - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
crimap Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
crux - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
distribfold - Use USERS and GROUPS 2011-06-27 17:50:37 +00:00
dna-qc - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
dotter - Updated WWW: to a working link 2011-04-22 18:59:11 +00:00
embassy Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
emboss Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
fasta - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
fasta3 - Update to 36.3.2 to fix distfile fetching on pointyhat 2011-01-26 20:26:36 +00:00
fastdnaml - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
finchtv - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
fluctuate - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
garlic Update to 1.6. Web site has been moved. 2011-05-11 05:55:27 +00:00
genpak - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
gff2ps - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
gmap - fix fetch: wget is not required for fetching 2010-12-12 08:10:05 +00:00
gperiodic - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
grappa Update to GNU make 3.82 after numerous -exp runs. 2011-04-11 19:54:35 +00:00
hmmer - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
iolib - Update to 1.12.5 2011-02-11 13:11:45 +00:00
jalview - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
kinemage Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 17:33:07 +00:00
L-Breeder Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
lagan - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
lamarc - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
libgenome - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
libsbml - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
linux-foldingathome - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
lsysexp Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
mafft - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
mapm3 - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
migrate - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
molden - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
mopac - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
mrbayes - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
mummer - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
muscle - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
ncbi-toolkit Fix build with open-motif-2.3.3 2011-05-02 12:41:44 +00:00
njplot Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
ortep3 - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-AcePerl - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-Bio-ASN1-EntrezGene - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-Bio-Das - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-Bio-Das-Lite - Update to 2.11 2011-05-08 17:06:15 +00:00
p5-Bio-GFF3 - Update to 0.5 2011-06-10 08:12:40 +00:00
p5-Bio-Glite - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-Bio-Graphics - update to 2.24 2011-06-01 20:21:51 +00:00
p5-Bio-MAGETAB - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-Bio-NEXUS - Use canonical format for FreeBSD.org MAINTAINER addresses 2010-12-25 16:55:41 +00:00
p5-Bio-Phylo - Update to 0.36 2011-04-01 08:34:03 +00:00
p5-Bio-SCF - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-bioperl - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
p5-bioperl-run - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
paml - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
phd2fasta - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
phrap - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
phred - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
phylip - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
phyml - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
platon - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
povchem Switch dependency on povray to povray-meta port. 2011-06-20 22:32:03 +00:00
primer3 - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
protomol - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
psi88 - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
py-biopython - Update to 1.57 2011-05-24 09:06:29 +00:00
pycogent - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy 2011-06-25 07:21:20 +00:00
pyfasta - Update to 0.4.3 2011-06-02 01:38:55 +00:00
pymol update to 1.4.1 2011-05-09 04:36:54 +00:00
python-nexus - Update to 0.8 2011-02-15 01:59:12 +00:00
rasmol - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
recombine - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
ruby-bio - Fix pkg-plist, got the wrong version before 2010-12-30 23:08:47 +00:00
seaview - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
seqio - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
sim4 - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
ssaha - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
t_coffee - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
tinker - Update to 5.1.09 2011-01-31 11:45:44 +00:00
treepuzzle - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
treeviewx - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
tRNAscan-SE - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
velvet Update to 1.1.04 2011-06-09 16:33:21 +00:00
wise - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
xdrawchem - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
xmolwt - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Makefile Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. 2011-04-22 08:51:24 +00:00