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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-23 00:43:28 +00:00
freebsd-ports/biology
Sunpoet Po-Chuan Hsieh c2d1a14c7c - Update to 7.31.0
- Bump PORTREVISION for ftp/curl shlib change
- Add TEST_DEPENDS
- Convert to new options framework
- Adjust options:
  - Add COOKIES
  - Add CYASSL, NSS, POLARSSL, THREADED_RESOLVER, TLS_SRP [1]
  - Add GSSAPI and SPNEGO [2]
  - Remove KERBEROS4
  - Rename LIBIDN to IDN
  - Remove TRACKMEMORY [1]
- Sort option handler
- Add SLAVEDIRS: ftp/curl-hiphop
- Cosmetic change
- Cleanup Makefile header
- While I'm here, fix typo (PORTREVSION) in x11-wm/ede/Makefile

Changes:	http://curl.haxx.se/changes.html
PR:		ports/172325 (-exp run), ports/177369 (based on) [1]
Submitted by:	Hirohisa Yamaguchi <umq@ueo.co.jp> [1], hrs (via email) [2]
Exp run by:	miwi
2013-07-11 16:26:26 +00:00
..
adun
ariadne . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 14:10:02 +00:00
artemis
avida - Fix build with clang 2013-06-04 08:26:03 +00:00
babel . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:01:47 +00:00
biococoa
biojava
blast
blat . remove pkg-plist (along with the previous commit). 2013-06-19 18:44:32 +00:00
boinc-simap Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk 2013-04-29 12:20:35 +00:00
chemeq . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 20:01:30 +00:00
clustalw
consed
crux
dotter
embassy Convert from USE_MOTIF to USES=motif 2013-07-09 21:49:35 +00:00
emboss Convert from USE_MOTIF to USES=motif 2013-07-09 21:49:35 +00:00
fasta Fix some PORT_OPTIONS conversions 2013-06-30 20:53:06 +00:00
fasta3
fastdnaml . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 13:35:55 +00:00
finchtv
fluctuate . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 12:43:28 +00:00
garlic
genpak
gff2ps . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 18:56:37 +00:00
gmap
gperiodic . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:05:47 +00:00
grappa
hmmer
iolib - Update to 7.31.0 2013-07-11 16:26:26 +00:00
jalview
lagan
lamarc . trim Makefile headers; 2013-06-19 15:39:18 +00:00
libgenome . add license (GPLv2); 2013-06-19 18:53:54 +00:00
libsbml
linux-foldingathome
mafft
mapm3
migrate - Update to 3.5.1 2013-05-26 07:49:47 +00:00
molden - Update to 5.0.6 2013-04-26 06:57:37 +00:00
mopac . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES; 2013-06-19 18:38:46 +00:00
mrbayes
mummer
muscle
ncbi-toolkit Convert from USE_MOTIF to USES=motif 2013-07-09 21:49:35 +00:00
njplot Convert from USE_MOTIF to USES=motif 2013-07-10 07:33:24 +00:00
ortep3 . introdice optionsNG to the port; 2013-06-19 20:06:59 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF - Trim Makefile headers 2013-06-01 14:22:35 +00:00
p5-bioperl - Avoid of using SITE_PERL 2013-06-07 06:51:42 +00:00
p5-bioperl-run
paml - Trim Makefile headers 2013-06-01 14:22:35 +00:00
phd2fasta Remove unneeded escaping 2013-04-26 16:23:13 +00:00
phrap
phred
phylip Fix some screw ups introduced in r319847. 2013-06-24 18:09:52 +00:00
phyml
platon
plink
plinkseq
povchem
primer3
protomol
psi88 . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:54:13 +00:00
py-biopython
pycogent
pyfasta - Trim Makefile headers 2013-06-01 14:22:35 +00:00
pymol
python-nexus
rasmol Convert to USES=imake 2013-06-28 18:32:25 +00:00
recombine . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:15:14 +00:00
ruby-bio
seaview
seqan
seqio Remove stale (since r321246) pkg-plist file. 2013-06-19 21:04:36 +00:00
sim4 . add license (GPLv2); 2013-06-19 16:36:53 +00:00
ssaha
t_coffee
tinker - Update to 6.2.05 2013-05-29 05:25:49 +00:00
treepuzzle
treeviewx
tRNAscan-SE . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-19 19:20:25 +00:00
ugene
velvet
wise Fix build by adding an explicit dep on pkgconf 2013-05-03 20:48:34 +00:00
xdrawchem
xmolwt Use optionsNG for DOCS. 2013-06-19 19:07:35 +00:00
Makefile