Edwin Groothuis b7eafb33b6 New Port: biology/act ...

PR:		ports/35753
Submitted by:	Camson Huynh <chuynh@biolateral.com.au>

2003-01-16 14:22:59 +00:00

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act

New Port: biology/act

2003-01-16 14:22:59 +00:00

artemis

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avida

Add some missing files

2003-01-14 03:39:21 +00:00

babel

update biology/babel to properly output mm3 files.

2003-01-03 08:52:41 +00:00

biojava

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chemeq

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clustalw

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coalesce

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crimap

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deft

PERL -> REINPLACE

2002-11-04 05:46:38 +00:00

distribfold

Fix typo: distribfold.org -> distributedfolding.org

2002-12-19 18:33:55 +00:00

dna-qc

PERL -> REINPLACE

2002-11-04 05:46:38 +00:00

emboss

- Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)

2002-09-27 08:58:19 +00:00

fasta

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fasta3

Prefer <limits.h> over <values.h> as the latter has been removed from

2002-08-23 03:36:33 +00:00

fastdnaml

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flip

PERL -> REINPLACE

2002-11-04 05:46:38 +00:00

fluctuate

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gaussian98

Remove USE_NEWGCC, which is no longer supported or required.

2002-08-31 02:38:29 +00:00

genpak

o Rollback PORTCOMMENT modifications while this feature's implementation

2002-11-10 16:48:51 +00:00

gff2ps

PERL -> REINPLACE

2002-11-04 01:56:21 +00:00

gperiodic

Deploy USE_GNOMENG infrastructure

2002-08-30 12:59:40 +00:00

grappa

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hmmer

- Add patch that will, for -CURRENT only, change: -pthread -> -lc_r

2002-07-11 10:52:14 +00:00

kinemage

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L-Breeder

Mark BROKEN due to "Unknown problem"

2002-11-25 02:11:13 +00:00

lamarc

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libgenome

add missing include

2002-12-29 04:44:13 +00:00

migrate

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molden

Update to 3.8

2003-01-08 12:05:57 +00:00

mopac

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nab

PERL -> REINPLACE

2002-11-04 01:56:21 +00:00

ncbi-toolkit

add forgotten "USE_REINPLACE=yes"

2002-09-21 14:56:18 +00:00

nclever

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ortep3

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p5-AcePerl

CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in

2002-10-10 12:59:36 +00:00

p5-bioperl

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p5-bioperl-devel

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paml

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phylip

Update to version 3.6.a3.

2002-08-13 16:07:45 +00:00

pkg

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platon

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povchem

PERL -> REINPLACE

2002-11-04 02:35:01 +00:00

primer3

Updated to fix problems as stated in PR ports/42915

2002-11-07 13:45:17 +00:00

psi88

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py-biopython

Use $PYNUMERIC in the dependencies.

2002-07-15 11:37:35 +00:00

pymol

1. add a missing dependency on png and unbreak.

2002-11-19 23:01:49 +00:00

rasmol

o Rollback PORTCOMMENT modifications while this feature's implementation

2002-11-10 16:48:51 +00:00

recombine

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ruby-bio

Use RUBY_MOD*.

2002-10-06 21:08:30 +00:00

seaview

unbroke by upgrade to 20021018

2002-11-20 14:03:25 +00:00

seqio

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sim4

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spdbv

upgrade to 3.7

2003-01-02 03:57:58 +00:00

t_coffee

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tinker

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treepuzzle

add treepuzzle 5.1

2002-11-20 08:54:10 +00:00

treeviewx

Chase new name of wxgtk shared library.

2002-09-09 14:21:08 +00:00

tRNAscan-SE

Port needs perl to build.

2002-11-04 01:47:57 +00:00

wise

Add missing file

2003-01-14 05:30:42 +00:00

xdrawchem

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xmolwt

Deploy USE_GNOMENG infrastructure

2002-08-30 12:59:40 +00:00

Makefile

New Port: biology/act

2003-01-16 14:22:59 +00:00