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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-22 00:35:15 +00:00
freebsd-ports/biology
Baptiste Daroussin 51c60ddf7f Convert to USES=dos2unix
While here stagify some of the ports
Modernize LIB_DEPENDS
Extract zip with bsdtar when possible
2013-11-18 13:45:44 +00:00
..
ariadne Stage support 2013-11-12 21:54:36 +00:00
artemis
avida
babel
biococoa
biojava
blast
blat Add stage support 2013-11-12 22:02:02 +00:00
boinc-simap
chemeq
clustalw
consed
crux Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
embassy
emboss
fasta
fasta3 Update to version 36.3.6d 2013-10-29 19:32:15 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [bce]) 2013-10-22 13:57:35 +00:00
grappa
hmmer
iolib
jalview
lagan
lamarc
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mopac
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3 Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3 - Update to 1.8 2013-11-02 19:55:32 +00:00
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml
platon Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
plink Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
plinkseq
povchem Convert to USES=dos2unix 2013-11-18 13:45:44 +00:00
primer3
protomol
psi88 Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-biopython Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pycogent Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pyfasta Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pymol
python-nexus
rasmol
recombine
ruby-bio
seaview
seqan Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
seqio
seqtools biology/seqtools: update to 4.23 2013-11-14 20:09:00 +00:00
sim4
ssaha
t_coffee Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
tinker Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene - Install official UGENE documentation (PDF) 2013-11-01 15:20:28 +00:00
velvet
wise
xmolwt
Makefile biology/seqtools: Tools for visualising sequence alignments 2013-11-10 11:01:02 +00:00