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12 lines
502 B
Plaintext
12 lines
502 B
Plaintext
StringTie is a fast and highly efficient assembler of RNA-seq alignments into
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potential transcripts. The input can be the alignments of raw reads as usual;
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it also accepts longer assembled sequences. The output can be processed by
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downstream software including Ballgown, Cuffdiff, etc.
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Citation:
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Pertea et al. (2015) StringTie enables improved reconstruction of a
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transcriptome from RNA-seq reads.
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Nature Biotechnology 33: 290-295 doi:10.1038/nbt.3122
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WWW: http://www.ccb.jhu.edu/software/stringtie/
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