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ariadne
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artemis
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avida
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- Unbreak on PowerPC by using atomicops implementation for Linux and GCC
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2015-09-02 12:29:09 +00:00 |
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babel
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Unbreak the build on PowerPC (at least) by always using va_copy() macro for
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2015-09-02 10:10:06 +00:00 |
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bcftools
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New port: biology/bcftools
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2015-06-05 21:01:13 +00:00 |
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biococoa
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Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
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2015-09-19 10:33:34 +00:00 |
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biojava
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blat
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bwa
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BWA is a program for aligning sequencing reads against a large reference
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2015-09-25 18:39:36 +00:00 |
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cd-hit
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- Use compiler:openmp instead of gcc
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2015-09-19 13:12:44 +00:00 |
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cdbfasta
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Fast indexing and retrieval of FASTA records from flat file data bases.
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2015-09-25 18:37:24 +00:00 |
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chemeq
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clustalw
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MASTER_SITES cleanup.
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2015-05-14 10:15:04 +00:00 |
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consed
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Deprecate ports broken for more than 6 months
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2015-10-25 19:35:28 +00:00 |
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crux
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Unbreak the build on PowerPC, it had nothing to do with "error in pthreads":
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2015-09-02 09:23:05 +00:00 |
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emboss
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fasta
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- Do not falsely advertise that PowerPC build runs out of space and fails
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2015-09-02 10:35:25 +00:00 |
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fasta3
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- Update to 36.3.8
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2015-10-16 13:31:10 +00:00 |
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fastdnaml
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fastool
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Simple and quick FastQ and FastA tool for file reading and conversion.
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2015-09-25 18:35:14 +00:00 |
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fasttree
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FastTree infers approximately-maximum-likelihood phylogenetic trees from
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2015-09-25 18:34:29 +00:00 |
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fastx-toolkit
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The FASTX-Toolkit is a collection of command line tools for Short-Reads
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2015-09-25 18:33:18 +00:00 |
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fluctuate
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- Switch to options helpers
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2015-11-19 00:51:15 +00:00 |
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garlic
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gff2ps
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Fix ports that confused the meaning of WRKDIR and WRKSRC.
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2015-11-05 12:36:25 +00:00 |
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gmap
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- Update to 2015.09.21
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2015-10-27 18:49:48 +00:00 |
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gperiodic
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grappa
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biology/grappa: define license (GPLv2)
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2015-09-25 18:55:08 +00:00 |
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hmmer
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htslib
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Update ports in the [bcd]* categories to not use GH_COMMIT.
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2015-05-06 15:16:53 +00:00 |
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iolib
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- Update to 1.14.6
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2015-11-09 16:02:13 +00:00 |
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jalview
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Remove $FreeBSD$ from patches files in categories a-j.
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2015-05-22 13:34:20 +00:00 |
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lagan
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- Fix shebangs
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2015-06-11 10:17:24 +00:00 |
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lamarc
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Remove ansi version fo wxGTK 2.8 and only keep the unicode version
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2015-09-16 19:51:26 +00:00 |
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libgtextutils
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Gordon's text utilities.
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2015-09-25 18:31:28 +00:00 |
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libsbml
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- Add LICENSE_FILE
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2015-10-14 23:51:20 +00:00 |
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linux-foldingathome
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mafft
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Use BROKEN helpers
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2015-06-27 14:30:19 +00:00 |
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mapm3
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migrate
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- Update options
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2015-06-28 15:30:41 +00:00 |
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molden
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mopac
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mrbayes
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mummer
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Fix build on mips by properly respecting compiler and flags
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2015-08-05 12:18:41 +00:00 |
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muscle
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ncbi-blast+
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- Unbreak
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2015-05-04 06:08:59 +00:00 |
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ncbi-toolkit
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p5-AcePerl
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-ASN1-EntrezGene
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Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The
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2015-06-24 15:16:23 +00:00 |
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-GFF3
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-Glite
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p5-Bio-Graphics
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-bioperl
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-bioperl-run
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paml
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phrap
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phred
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phylip
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Unbreak
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2015-07-28 17:52:11 +00:00 |
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phyml
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platon
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- Mark BROKEN: checksum mismatch:
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2015-11-29 03:13:34 +00:00 |
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plink
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plinkseq
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primer3
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protomol
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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psi88
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- Strip binaries
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2015-06-03 17:27:08 +00:00 |
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py-biopython
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Update to 1.65.
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2015-08-05 10:32:31 +00:00 |
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pycogent
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pyfasta
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python-nexus
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recombine
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ruby-bio
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- Fix typo
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2015-10-10 23:15:16 +00:00 |
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samtools
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Update ports in the [bcd]* categories to not use GH_COMMIT.
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2015-05-06 15:16:53 +00:00 |
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seaview
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biology/seaview: Broken, Does not fetch (checksum mismatch)
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2015-11-02 08:14:30 +00:00 |
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seqan
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seqio
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seqtools
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biology/seqtools: 4.39.2 -> 4.39.3
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2015-12-05 13:20:21 +00:00 |
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sim4
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ssaha
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t_coffee
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MASTER_SITES cleanup.
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2015-05-14 10:15:04 +00:00 |
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tinker
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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treepuzzle
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treeviewx
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- Pet portlint
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2015-10-14 23:50:11 +00:00 |
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tRNAscan-SE
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ugene
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biology/ugene: qt4-linguist -> qt4-linguisttools
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2015-08-18 20:02:45 +00:00 |
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velvet
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wise
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xmolwt
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Fix previous commit.
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2015-08-19 13:41:51 +00:00 |
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Makefile
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Remove expired ports:
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2015-11-28 23:08:03 +00:00 |
2625cb4896