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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-21 00:25:50 +00:00
freebsd-ports/biology
Wen Heping f6912d8c17 - Update to 5.10.2
PR:		192198
Submitted by:	tkato432@yahoo.com
2014-08-10 06:21:53 +00:00
..
ariadne Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
artemis
avida
babel Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
biococoa
biojava
blast Mark as broken: no distinfo provided 2014-06-22 22:06:01 +00:00
blat Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk 2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw
consed Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
crux Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
embassy Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
emboss
fasta
fasta3
fastdnaml
fluctuate
garlic biology/garlic: Stage properly to unbreak 2014-07-17 10:13:06 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS. 2014-07-15 14:54:54 +00:00
iolib
jalview
lagan
lamarc
libsbml - Update to 5.10.2 2014-08-10 06:21:53 +00:00
linux-foldingathome Stagify. 2014-07-06 16:05:34 +00:00
mafft Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
mapm3
migrate
molden
mopac - Switch to USES=libtool, drop .la files 2014-08-06 16:05:49 +00:00
mrbayes
mummer biology/mummer: Use OPSYS with OSVERSION 2014-07-19 22:00:16 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
p5-Bio-ASN1-EntrezGene Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Really fix. 2014-07-25 23:08:58 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl biology/p5-bioperl: fix pkg-descr sidenote link 2014-08-04 04:32:38 +00:00
p5-bioperl-run biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify 2014-08-04 08:54:10 +00:00
paml Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
phd2fasta Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
phrap
phred
phylip
phyml
platon Add a DOCS option. 2014-08-03 21:44:23 +00:00
plink
plinkseq - Switch to USES=libtool, drop .la files 2014-07-22 22:12:15 +00:00
povchem Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
primer3
protomol Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
psi88 Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
py-biopython
pycogent
pyfasta
pymol Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
python-nexus
recombine
ruby-bio
seaview
seqan Use gcc on all platforms. 2014-07-10 22:29:52 +00:00
seqio
seqtools USES=execinfo 2014-08-04 23:06:21 +00:00
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
ugene USES=execinfo 2014-08-04 23:06:21 +00:00
velvet Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
wise
xmolwt
Makefile