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mirror of https://git.FreeBSD.org/ports.git synced 2025-01-01 05:45:45 +00:00
freebsd-ports/science
Yuri Victorovich 1afb7cd5cd science/abinit: Add MPI options; Fix run-time failures due to wrong version
MPI options NOMPI MPICH OPENMPI are added, MPICH is a default.

As it turned out, openmpi is also currently broken on FreeBSD due
to failure to allocate shmem backing memory.

The abinit failure to determine version is also fixed.
It used UNKNOWN as version which caused run-time failure to save data.

PR:		281122
Reported by:	Ramon <rcuscoptc@gmail.com> (run-time failure due to UNKNOWN version)
2024-08-30 10:50:55 -07:00
..
2d-rewriter
abinit science/abinit: Add MPI options; Fix run-time failures due to wrong version 2024-08-30 10:50:55 -07:00
afni science/afni: update to 24.2.03 2024-08-21 17:22:16 +02:00
agrum science/agrum: update 1.14.1 → 1.15.0 2024-07-23 02:28:16 -07:00
aircraft-datcom
ALPSCore
antioch
apbs
arbor science/arbor: Replace the units bundled lib with external dependency 2024-08-25 17:52:24 -07:00
ascent
atompaw
avogadro2
avogadrolibs
axom
bagel */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
bddsolve
berkeleygw */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
bodr
bout++ */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
bout++-merging-filaments
buddy
cantera */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
cardioid science/cardioid: fix build without libomp 2024-07-29 17:10:13 +02:00
cdf
cdk
cdo graphics/proj: Update to 9.4.1 2024-08-28 08:54:30 +02:00
cgnslib
cgribex
checkmol */*: Bump PORTREVISION. lang/fpc was updated to 3.2.3 2024-06-16 03:26:36 -05:00
chemical-mime-data
chemicalfun */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
chemps2 */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
chemtool
chemtool-devel
chimes-calculator
ChipmunkPhysics
chrono */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
cif-tools science/cif-tools: update 1.0.11 → 1.0.12 2024-07-29 19:01:57 -07:00
clhep
clipper
code_saturne
colt
conduit
coordgenlibs
cp2k science/cp2k: Remove unnecessary patch 2024-08-25 19:05:40 -07:00
cp2k-data science/cp2k{,-data}: update 2022.2 → 2024.2 2024-08-25 17:52:25 -07:00
csvtk all: Bump after lang/go121 update 2024-08-09 06:24:08 +00:00
dakota */*: Bump PORTVERSION of math/nlopt consumers 2024-08-25 15:33:16 +02:00
dalton */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
dd_package
devisor
dftbplus */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
dftd3
dftd4 */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
dimod science/{,py-}dimod: update 0.12.15 → 0.12.16 2024-07-10 19:20:43 -07:00
dirac science/dirac: Broken on i386 2024-04-27 00:53:00 -07:00
dkh
dlib-cpp
drawxtl
dssp science/libcifpp: update 5.1.0.1 → 7.0.4 2024-07-29 19:01:57 -07:00
dvc devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
dwave-preprocessing
dynare */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
eccodes science/eccodes: Update to 2.36.0 2024-07-07 00:02:03 +08:00
elk science/elk: update 10.0.1 → 10.0.15 2024-08-14 14:06:57 -07:00
elmerfem */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
epte
erd
ergo
erkale */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
erkale-pseudopotentials
fastcap
fasthenry
fastjet
feff10
fleur */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
frontistr */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
gchemutils
gcp
gdma
geant4 devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
gemmi science/{,py-}gemmi: update 0.6.5 → 0.6.6 2024-05-29 01:49:15 -07:00
getdp
ghemical
ghmm
gnudatalanguage graphics/proj: Update to 9.4.1 2024-08-28 08:54:30 +02:00
gpaw-setups
gramps science/gramps: Update to 5.2.3 2024-07-15 20:19:04 +01:00
grib_api
gromacs science/gromacs: Minor correction 2024-05-27 15:52:35 -07:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18 */*: Remove incorrect libtool dependency 2024-05-26 12:52:26 +02:00
hdf5-110 science/hdf5-110: Update to 1.10.11 2024-06-19 03:52:57 +08:00
healpix
helfem math/armadillo: Update to 14.0.0 2024-07-07 00:01:50 +08:00
hepmc3 science/hepmc3: update 3.2.7 → 3.3.0 2024-06-20 18:52:59 -07:00
highfive science/highfive: update 2.9.0 → 2.10.0 2024-07-29 22:16:24 -07:00
hypre science/hypre: don’t use internal BLAS but switch to OpenBLAS 2024-06-15 11:12:24 +02:00
iboview */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
InsightToolkit science/InsightToolkit: Fix build with CMake 3.29 2024-05-07 05:05:20 -04:00
InsightToolkit501 science/InsightToolkit501: Fix build om i386 2024-06-02 13:43:43 -07:00
isaac-cfd
jdftx
jmol
jstrack
kalzium
kim-api
kplib
kst2 graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
lammps devel/kokkos: update 4.3.01 → 4.4.00 2024-08-19 12:11:44 -07:00
lamprop
latte */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
libaec
libccp4
libcifpp science/libcifpp: update 5.1.0.1 → 7.0.4 2024-07-29 19:01:57 -07:00
libcint */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
libctl */*: Bump PORTVERSION of math/nlopt consumers 2024-08-25 15:33:16 +02:00
libecpint
libefp
libgetar science/{,py-}libgetar: update 1.1.5 → 1.1.7 2024-07-16 17:42:46 -07:00
libghemical
libgridxc
libint
libint2
libint2-psi4
libkml
liblinear
libmbd */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
libmsym
libnegf */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
linearelasticity science/linearelasticity: new port, Elas, a solver for linear elasticity 2024-06-23 14:58:40 +02:00
linux-zotero
luscus
m-aneos
madness
maeparser
massxpert
mbdyn */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
mcpl
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep science/meep: update 1.28.0 → 1.29.0 2024-08-25 01:04:52 -07:00
metaphysicl
minc2
mmdb2
mmg science/mmg: Improve port 2024-06-30 09:40:20 +02:00
mmtf-cpp
mol2ps */*: Bump PORTREVISION. lang/fpc was updated to 3.2.3 2024-06-16 03:26:36 -05:00
molgif all: Bump after lang/go121 update 2024-08-09 06:24:08 +00:00
molscript
molsketch
mopac */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
mp2d
mpb */*: Bump PORTVERSION of math/nlopt consumers 2024-08-25 15:33:16 +02:00
mpqc
mrchem
mrcpp
msms
mstore science/mstore: update 0.2.0 → 0.3.0 2024-06-14 02:11:34 -07:00
multicharge */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
multiwfn */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
mutationpp
namd
ncrystal science/{,py-}ncrystal: update 3.9.1 → 3.9.2 2024-08-20 01:42:36 -07:00
nest science/nest: update 3.7 → 3.8 2024-08-03 01:27:30 -07:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nlcglib science/nlcglib: update 1.0b-20230622 → 1.1.0 2024-08-19 12:11:36 -07:00
nwchem
nwchem-data
ocean */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
octopus */*: Bump PORTVERSION of math/nlopt consumers 2024-08-25 15:33:16 +02:00
openbabel
openems
openkim-models
openmc science/openmc: don't enable OPENMP without libomp 2024-08-04 14:00:50 +02:00
openmodelica science/openmodelica: update 1.23.0 → 1.23.1 2024-07-05 02:01:48 -07:00
openmolcas science/openmolcas: update 23.06 → 24.06 2024-06-16 09:56:31 -07:00
openmx science/openmx: update 3.8.5 → 3.9.9 2024-06-16 18:20:36 -07:00
opensim-core science/opensim-core: Use swig40 instead of swig 2024-07-14 04:19:04 +08:00
opensph devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
opsin
optench
orthanc devel/protobuf: Update to 27.3 2024-08-15 18:55:26 +08:00
orthanc-dicomweb
orthanc-mysql
orthanc-postgresql
orthanc-webviewer
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Calc
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-Coordinates-Transform
p5-Geo-WebService-Elevation-USGS science/p5-Geo-WebService-Elevation-USGS: Update to 0.200 2024-07-07 00:11:39 +08:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 */*: Bump PORTVERSION of math/nlopt consumers 2024-08-25 15:33:16 +02:00
paje
paraview math/pdal: Update to 2.7.2 2024-08-29 10:35:55 +02:00
pastix */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
pcmsolver
PETSc science/PETSc: update 3.21.3 → 3.21.4 2024-07-31 09:37:28 -07:00
phonopy science/{,py-}phonopy: update 2.26.6 → 2.27.0 2024-08-24 08:03:34 -07:00
plumed
pnetcdf
polytope
precice
psi4 */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
pulseview
py-abipy devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-access graphics/py-geopandas: Update to 0.14.4 2024-08-28 08:54:30 +02:00
py-arbor science/py-arbor: update 0.10.0 → 0.10.1 2024-08-27 00:45:28 -07:00
py-arch
py-asap3
py-asdf science/py-asdf: Update to 3.4.0 2024-08-15 18:55:39 +08:00
py-asdf-standard
py-asdf-transform-schemas
py-ase science/py-ase: update 3.22.1 → 3.23.0 2024-07-12 22:17:49 -07:00
py-atomium security/libsodium: update to 1.0.19, bump dependent ports 2024-05-20 10:33:03 +00:00
py-avogadrolibs
py-boutdata
py-boututils
py-cdo science/py-cdo: Update WWW and clean up pkg-descr 2024-07-19 00:46:26 +08:00
py-cfgrib science/py-cfgrib: Update to 0.9.14.0 2024-07-21 17:57:09 +08:00
py-chainer devel/protobuf: Update to 27.3 2024-08-15 18:55:26 +08:00
py-chainer-chemistry
py-chempy security/libsodium: update to 1.0.19, bump dependent ports 2024-05-20 10:33:03 +00:00
py-cirq-aqt science/py-cirq-aqt: update 1.3.0 → 1.4.1 2024-08-20 10:51:33 -07:00
py-cirq-core science/py-cirq-core: update 1.3.0 → 1.4.1 2024-08-20 10:51:34 -07:00
py-cirq-google science/py-cirq-google: update 1.3.0 → 1.4.1 2024-08-20 10:51:34 -07:00
py-cirq-ionq science/py-cirq-ionq: update 1.3.0 → 1.4.1 2024-08-20 10:51:34 -07:00
py-cirq-pasqal science/py-cirq-pasqal: update 1.3.0 → 1.4.1 2024-08-20 10:51:33 -07:00
py-cirq-rigetti science/py-cirq-rigetti: update 1.3.0 → 1.4.1 2024-08-20 10:51:35 -07:00
py-coards science/py-coards: Convert to USE_PYTHON=pep517 2024-05-13 22:06:41 +08:00
py-DendroPy science/py-DendroPy: Update to 5.0.1 2024-06-03 07:29:16 +00:00
py-dftbplus science/{,py-}dftbplus: update 23.1 → 24.1 2024-05-28 01:12:11 -07:00
py-dftd4
py-dimod science/{,py-}dimod: update 0.12.15 → 0.12.16 2024-07-10 19:20:43 -07:00
py-dipy
py-dlib
py-dwave-cloud-client science/py-dwave-cloud-client: update 0.11.3 → 0.12.0 2024-07-14 20:00:20 -07:00
py-dwave-greedy
py-dwave-hybrid
py-dwave-inspector science/py-dwave-inspector: update 0.4.4 → 0.5.0.post0 2024-07-16 17:42:45 -07:00
py-dwave-neal
py-dwave-networkx science/py-dwave-networkx: update 0.8.14 → 0.8.15 2024-06-15 02:12:44 -07:00
py-dwave-ocean-sdk
py-dwave-optimization science/py-dwave-optimization: Add USE_PYTHON=pep517 2024-07-15 09:33:30 -07:00
py-dwave-preprocessing science/py-dwave-preprocessing: update 0.6.5 → 0.6.6 2024-07-14 20:00:19 -07:00
py-dwave-samplers science/py-dwave-samplers: update 1.2.0 → 1.3.0 2024-07-14 20:00:19 -07:00
py-dwave-system science/py-dwave-system: update 1.23.0 → 1.25.0 2024-07-15 00:19:27 -07:00
py-dwave-tabu
py-dwavebinarycsp
py-earthpy graphics/py-geopandas: Update to 0.14.4 2024-08-28 08:54:30 +02:00
py-eccodes science/py-eccodes: Update to 1.7.1 2024-07-07 00:04:08 +08:00
py-emmet-core
py-esda
py-fresnel devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
py-gemmi science/{,py-}gemmi: update 0.6.5 → 0.6.6 2024-05-29 01:49:15 -07:00
py-geolinks science/py-geolinks: Convert to USE_PYTHON=pep517 2024-05-13 22:06:44 +08:00
py-geomet
py-geometer science/py-geometer: Convert to USE_PYTHON=pep517 2024-05-13 22:06:46 +08:00
py-geometric
py-gpaw */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
py-GPy science/py-GPy: update 1.13.1 → 1.13.2 2024-08-20 01:42:35 -07:00
py-GPyOpt
py-gsd
py-h5json
py-h5py
py-h5pyd
py-HepMC3 science/py-HepMC3: broken on powerpc 2024-08-04 14:00:16 +02:00
py-hiphive
py-HofstadterTools */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
py-hoomd-blue science/py-hoomd-blue: update 4.8.1 → 4.8.2 2024-07-25 09:58:55 -07:00
py-inequality science/py-inequality: Update WWW and clean up pkg-descr 2024-07-19 00:46:28 +08:00
py-ipygany security/libsodium: update to 1.0.19, bump dependent ports 2024-05-20 10:33:03 +00:00
py-jupyter_jsmol security/libsodium: update to 1.0.19, bump dependent ports 2024-05-20 10:33:03 +00:00
py-kim-query
py-kimpy
py-kinematics science/py-kinematics: Convert to USE_PYTHON=pep517 2024-05-13 22:06:47 +08:00
py-kliff devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-kpLib
py-liac-arff science/py-liac-arff: Convert to USE_PYTHON=pep517 2024-05-13 22:06:49 +08:00
py-libgetar science/{,py-}libgetar: update 1.1.5 → 1.1.7 2024-07-16 17:42:46 -07:00
py-libpysal science/py-libpysal: Convert to USE_PYTHON=pep517 2024-07-03 23:34:37 +08:00
py-lifelines
py-MDAnalysis science/py-MDAnalysis{,Tests}: update 2.3.0 → 2.7.0 2024-05-06 14:06:15 -07:00
py-MDAnalysisTests science/py-MDAnalysis{,Tests}: update 2.3.0 → 2.7.0 2024-05-06 14:06:15 -07:00
py-mdp
py-mercantile science/py-mercantile: Move science/mercantile to science/py-mercantile 2024-08-05 01:13:55 +08:00
py-meshio science/py-meshio: Fix build with removing setuptools from RUN_D 2024-06-25 13:28:26 +00:00
py-mmcif
py-mmtf-python
py-molmod
py-moltemplate
py-mp-api
py-mpcontribs-client
py-mplhep science/py-mplhep: update 0.3.49 → 0.3.51 2024-08-08 10:18:44 -07:00
py-mplhep-data science/py-mplhep-data: New port: Font (Data) sub-package for mplhep 2024-06-23 03:54:13 -07:00
py-mrchem
py-ncrystal science/{,py-}ncrystal: update 3.9.1 → 3.9.2 2024-08-20 01:42:36 -07:00
py-netCDF4
py-netcdf-flattener science/py-netcdf-flattener: Convert to USE_PYTHON=pep517 2024-05-13 22:06:50 +08:00
py-nglview
py-nibabel
py-nilearn
py-obspy science/py-obspy: Update to 1.4.1 2024-05-06 08:53:04 +00:00
py-oddt
py-openbabel
py-openEMS science/py-openEMS: Remove unnecessary line 2024-08-30 10:50:55 -07:00
py-OpenFermion
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC science/py-OpenMC: update 0.14.0 → 0.15.0 2024-06-22 00:22:25 -07:00
py-openpiv
py-optking security/libsodium: update to 1.0.19, bump dependent ports 2024-05-20 10:33:03 +00:00
py-paida
py-paramz science/py-paramz: update 0.9.5 → 0.9.6 2024-08-20 01:42:35 -07:00
py-penaltymodel
py-periodictable science/py-periodictable: update 1.7.0 → 1.7.1 2024-07-09 02:12:11 -07:00
py-phono3py devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-phonopy science/{,py-}phonopy: update 2.26.6 → 2.27.0 2024-08-24 08:03:34 -07:00
py-PubChemPy
py-pupynere science/py-pupynere: Clean up pkg-descr 2024-07-19 00:46:30 +08:00
py-py3Dmol
py-pyaixi science/py-pyaixi: Convert to USE_PYTHON=pep517 2024-05-13 22:06:54 +08:00
py-pyberny
py-pycsw graphics/py-OWSLib: Update to 0.31.0 2024-08-28 08:54:29 +02:00
py-pydicom
py-PyFR
py-pygeodesy science/py-pygeodesy: Convert to USE_PYTHON=pep517 2024-05-13 22:06:57 +08:00
py-pygeometa graphics/py-OWSLib: Update to 0.31.0 2024-08-28 08:54:29 +02:00
py-pygmo2 */*: Bump PORTVERSION of math/nlopt consumers 2024-08-25 15:33:16 +02:00
py-pyked devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-pymatgen
py-pymatgen-analysis-alloys
py-pymbd
py-pymol
py-PyNE devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-pyosf
py-pyprecice
py-pyqubo
py-pysal science/py-pysal: Update to 24.1 2024-07-19 00:46:34 +08:00
py-pyscf */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
py-pyteomics science/py-pyteomics: Update to 4.7.3 2024-08-05 01:14:10 +08:00
py-qcelemental science/py-qcelemental: update 0.27.1 → 0.28.0 2024-07-12 22:17:53 -07:00
py-qcengine devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-qspin
py-quantities
py-rmf science/{,py-}rmf: update 1.6.0 → 1.6.1 2024-05-24 21:12:09 -07:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize science/py-scikit-optimize: Convert to USE_PYTHON=pep517 2024-05-13 22:07:02 +08:00
py-scikit-sparse */*: chase SuiteSparse’s upgrade 2024-04-29 22:08:56 +02:00
py-scimath
py-scipy science/py-scipy: Fix build with Clang 19 2024-08-15 19:53:55 +08:00
py-scoria
py-sdf
py-segregation graphics/py-geopandas: Update to 0.14.4 2024-08-28 08:54:30 +02:00
py-segyio
py-signac
py-SimpleSpectral
py-sklearn-pandas science/py-sklearn-pandas: Convert to USE_PYTHON=pep517 2024-05-13 22:07:04 +08:00
py-skrebate science/py-skrebate: Convert to USE_PYTHON=pep517 2024-05-13 22:07:06 +08:00
py-spaghetti
py-spglib science/{,py-}spglib: update 2.4.0 → 2.5.0 2024-07-12 02:01:04 -07:00
py-tensorflow
py-thewalrus
py-tobler graphics/py-geopandas: Update to 0.14.4 2024-08-28 08:54:30 +02:00
py-trainstation science/py-trainstation: update 1.0 → 1.1 2024-06-12 08:26:14 -07:00
py-trx-python science/py-trx-python: Fix build with removing setuptools from RUN_D 2024-06-24 22:17:01 +00:00
py-tweedledum science/py-tweedledum: update 1.1.1 → 1.1.1-20221123 2024-06-02 21:24:15 -07:00
py-vedo science/py-vedo: update 2023.5.0 → 2024.5.2 2024-06-24 12:58:30 -07:00
py-veusz
py-xbout
pybrain
pynn science/pynn: Update to 0.12.3 2024-05-08 10:27:21 +00:00
q
qbox science/qbox: update 1_78_1 → 1_78_2 2024-08-10 00:07:31 -07:00
qcl
qiskit-aer */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
qmcpack */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
qt6-quick3dphysics Qt6: Update to 6.7.2 2024-06-20 18:44:32 -04:00
quantum-espresso */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
quantum-espresso-pseudopotentials
quantum-jet */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
qwalk
R-cran-bayesm
R-cran-cmprsk science/R-cran-cmprsk: Update to 2.2-12 2024-05-21 03:45:17 +00:00
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi science/R-cran-Epi: Update to 2.53 2024-07-21 17:10:15 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab science/R-cran-kernlab: Update to 0.9-33 2024-08-15 03:12:49 +00:00
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Broken on 15 aarch64 2024-05-27 13:56:47 -07:00
rmf science/{,py-}rmf: update 1.6.0 → 1.6.1 2024-05-24 21:12:09 -07:00
rubygem-ai4r
rubygem-cdo science/rubygem-cdo: Update WWW and clean up pkg-descr 2024-07-19 00:47:17 +08:00
rubygem-rgeo
rubygem-rgeo-geojson science/rubygem-rgeo-geojson: Update to 2.2.0 2024-07-24 19:45:20 +08:00
rubygem-rgeo-proj4 graphics/proj: Update to 9.4.1 2024-08-28 08:54:30 +02:00
rubygem-rgeo-shapefile science/rubygem-rgeo-shapefile: Change RUN_DEPENDS from rubygem-dbf to rubygem-dbf4 2024-05-20 01:18:13 +08:00
rubygem-ruby-netcdf
salome-configuration
salome-kernel
scidavis */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
sciplot
segyio
serac
shelxle science/shelxle: update 1.0.1670 → 1.0.1672 2024-08-20 22:09:32 -07:00
siconos science/siconos: update 4.4.0 → 4.5.0 2024-08-01 22:09:50 -07:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
simgrid
simint
simlib
simple-dftd3 science/simple-dftd3: update 1.0.0 → 1.1.0 2024-07-28 14:25:26 -07:00
simsmith
sirius science/sirius: update 7.5.2 → 7.6.0 2024-08-23 20:45:45 -07:00
smoldyn graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
sparta
spglib science/{,py-}spglib: update 2.4.0 → 2.5.0 2024-07-12 02:01:04 -07:00
spheral science/spheral: update 2024.01.1 → 2024.06.1 2024-07-12 07:41:23 -07:00
step */*: Chase math/libqalculate shlib version bump 2024-05-15 16:49:00 -04:00
tblite */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
teem
tfel all: drop support for FreeBSD 13.2 which reached EOL today 2024-07-01 22:27:23 +02:00
tfel-edf
thermofun science/thermofun: update 0.4.5 → 0.5.0 2024-07-26 01:57:56 -07:00
tinker science/tinker: Fix fetch: the release was re-rolled 2024-06-23 18:32:59 -07:00
trilinos science/trilinos: update 15-1-1 → 16-0-0 2024-08-23 14:41:05 -07:00
ttk
tweedledum
udunits science/udunits: Update WWW and clean up pkg-descr 2024-07-19 00:45:09 +08:00
ukrmol+ */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
v_sim
vipster
vmd
voro++
votca science/votca: update 2024 → 2024.1 2024-07-17 08:17:16 -07:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
yoda
zotero science/zotero: Fix for document indexing 2024-05-16 13:29:22 +02:00
zx
Makefile science/py-openEMS: New port: Electromagnetic field solver using the EC-FDTD method 2024-08-29 00:11:54 -07:00