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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-28 05:29:48 +00:00
freebsd-ports/science
Yuri Victorovich 82369c288d science/{,py-}phonopy: update 2.26.4 → 2.26.5
Reported by:	portscout
2024-07-15 00:53:52 -07:00
..
2d-rewriter
abinit
afni science/afni: update to 24.1.22 2024-06-23 13:40:32 +02:00
agrum science/agrum: update 1.14.0 → 1.14.1 2024-07-10 19:20:42 -07:00
aircraft-datcom
ALPSCore
antioch
apbs
arbor
ascent
atompaw
avogadro2
avogadrolibs
axom
bagel */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
bddsolve
berkeleygw */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
bodr
bout++ */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
bout++-merging-filaments
buddy
cantera */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
cardioid
cdf
cdk
cdo science/cdo: Update to 2.4.2 2024-07-07 00:02:01 +08:00
cgnslib
cgribex
checkmol
chemical-mime-data
chemicalfun */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
chemps2 */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
chemtool
chemtool-devel
chimes-calculator
ChipmunkPhysics
chrono */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
cif-tools
clhep
clipper
code_saturne
colt
conduit
coordgenlibs
cp2k
cp2k-data
csvtk all: Bump after lang/go121 update 2024-07-03 08:29:54 +00:00
dakota
dalton */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
dd_package
devisor
dftbplus */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
dftd3
dftd4 */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
dimod science/{,py-}dimod: update 0.12.15 → 0.12.16 2024-07-10 19:20:43 -07:00
dirac
dkh
dlib-cpp
drawxtl
dssp
dvc devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
dwave-preprocessing
dynare */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
eccodes science/eccodes: Update to 2.36.0 2024-07-07 00:02:03 +08:00
elk science/elk: update 9.6.8 → 10.0.1 2024-06-26 11:50:37 -07:00
elmerfem */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
epte
erd
ergo
erkale */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
erkale-pseudopotentials
fastcap
fasthenry
fastjet
feff10
fleur */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
frontistr */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
gchemutils
gcp
gdma
geant4 devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
gemmi
getdp
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps
grib_api
gromacs
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
hdf5-110 science/hdf5-110: Update to 1.10.11 2024-06-19 03:52:57 +08:00
healpix
helfem math/armadillo: Update to 14.0.0 2024-07-07 00:01:50 +08:00
hepmc3 science/hepmc3: update 3.2.7 → 3.3.0 2024-06-20 18:52:59 -07:00
highfive
hypre
iboview */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
InsightToolkit
InsightToolkit501
isaac-cfd
jdftx
jmol
jstrack
kalzium
kim-api
kplib
kst2
lammps */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
lamprop
latte */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
libaec
libccp4
libcifpp
libcint */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
libctl
libecpint
libefp
libgetar
libghemical
libgridxc
libint
libint2
libint2-psi4
libkml
liblinear
libmbd */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
libmsym
libnegf */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
linearelasticity science/linearelasticity: new port, Elas, a solver for linear elasticity 2024-06-23 14:58:40 +02:00
linux-zotero
luscus
m-aneos
madness
maeparser
massxpert
mbdyn
mcpl
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
mercantile
metaphysicl
minc2
mmdb2
mmg science/mmg: Improve port 2024-06-30 09:40:20 +02:00
mmtf-cpp
mol2ps
molgif all: Bump after lang/go121 update 2024-07-03 08:29:54 +00:00
molscript
molsketch
mopac */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
mp2d
mpb */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
mpqc
mrchem
mrcpp
msms
mstore
multicharge */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
multiwfn */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
mutationpp
namd
ncrystal
nest
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nlcglib */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
nwchem
nwchem-data
ocean */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
octopus science/octopus: Attempt to fix build on i386 2024-07-09 03:08:39 -07:00
openbabel
openems
openkim-models
openmc science/openmc: update 0.14.0 → 0.15.0 2024-06-22 00:22:24 -07:00
openmodelica science/openmodelica: update 1.23.0 → 1.23.1 2024-07-05 02:01:48 -07:00
openmolcas
openmx
opensim-core science/opensim-core: Use swig40 instead of swig 2024-07-14 04:19:04 +08:00
opensph devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
opsin
optench
orthanc
orthanc-dicomweb
orthanc-mysql
orthanc-postgresql
orthanc-webviewer
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Calc
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-Coordinates-Transform
p5-Geo-WebService-Elevation-USGS science/p5-Geo-WebService-Elevation-USGS: Update to 0.200 2024-07-07 00:11:39 +08:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
paje
paraview devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
pastix */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
pcmsolver
PETSc science/PETSc: update 3.21.2 → 3.21.3 2024-07-12 23:46:13 -07:00
phonopy science/{,py-}phonopy: update 2.26.4 → 2.26.5 2024-07-15 00:53:52 -07:00
plumed
pnetcdf
polytope
precice
psi4 */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
pulseview
py-abipy devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-access
py-arbor
py-arch
py-asap3
py-asdf science/py-asdf: Update to 3.3.0 2024-07-14 04:17:52 +08:00
py-asdf-standard
py-asdf-transform-schemas
py-ase science/py-ase: update 3.22.1 → 3.23.0 2024-07-12 22:17:49 -07:00
py-atomium
py-avogadrolibs
py-boutdata
py-boututils
py-cdo
py-cfgrib science/py-cfgrib: Update to 0.9.13.0 2024-07-07 00:04:06 +08:00
py-chainer
py-chainer-chemistry
py-chempy
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti
py-coards
py-DendroPy
py-dftbplus
py-dftd4
py-dimod science/{,py-}dimod: update 0.12.15 → 0.12.16 2024-07-10 19:20:43 -07:00
py-dipy
py-dlib
py-dwave-cloud-client science/py-dwave-cloud-client: update 0.11.3 → 0.12.0 2024-07-14 20:00:20 -07:00
py-dwave-greedy
py-dwave-hybrid
py-dwave-inspector
py-dwave-neal
py-dwave-networkx
py-dwave-ocean-sdk
py-dwave-optimization science/py-dwave-optimization: New port: DWave: Nonlinear models for industrial optimization problems 2024-07-15 00:19:26 -07:00
py-dwave-preprocessing science/py-dwave-preprocessing: update 0.6.5 → 0.6.6 2024-07-14 20:00:19 -07:00
py-dwave-samplers science/py-dwave-samplers: update 1.2.0 → 1.3.0 2024-07-14 20:00:19 -07:00
py-dwave-system science/py-dwave-system: update 1.23.0 → 1.25.0 2024-07-15 00:19:27 -07:00
py-dwave-tabu
py-dwavebinarycsp
py-earthpy
py-eccodes science/py-eccodes: Update to 1.7.1 2024-07-07 00:04:08 +08:00
py-emmet-core
py-esda
py-fresnel devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
py-gemmi
py-geolinks
py-geomet
py-geometer
py-geometric
py-gpaw */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
py-GPy
py-GPyOpt
py-gsd
py-h5json
py-h5py
py-h5pyd
py-HepMC3 science/py-HepMC3: Broken on i386 2024-06-25 02:26:06 -07:00
py-hiphive
py-HofstadterTools */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
py-hoomd-blue devel/onetbb: Update to 2021.13.0 2024-07-04 13:39:44 +02:00
py-inequality
py-ipygany
py-jupyter_jsmol
py-kim-query
py-kimpy
py-kinematics
py-kliff devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-kpLib
py-liac-arff
py-libgetar
py-libpysal science/py-libpysal: Convert to USE_PYTHON=pep517 2024-07-03 23:34:37 +08:00
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-meshio science/py-meshio: Fix build with removing setuptools from RUN_D 2024-06-25 13:28:26 +00:00
py-mmcif
py-mmtf-python
py-molmod
py-moltemplate
py-mp-api
py-mpcontribs-client
py-mplhep science/py-mplhep: New port: Matplotlib styles for HEP 2024-06-23 03:54:13 -07:00
py-mplhep-data science/py-mplhep-data: New port: Font (Data) sub-package for mplhep 2024-06-23 03:54:13 -07:00
py-mrchem
py-ncrystal
py-netCDF4
py-netcdf-flattener
py-nglview
py-nibabel
py-nilearn
py-obspy
py-oddt
py-openbabel
py-OpenFermion
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC science/py-OpenMC: update 0.14.0 → 0.15.0 2024-06-22 00:22:25 -07:00
py-openpiv
py-optking
py-paida
py-paramz
py-penaltymodel
py-periodictable science/py-periodictable: update 1.7.0 → 1.7.1 2024-07-09 02:12:11 -07:00
py-phono3py devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-phonopy science/{,py-}phonopy: update 2.26.4 → 2.26.5 2024-07-15 00:53:52 -07:00
py-PubChemPy
py-pupynere
py-py3Dmol
py-pyaixi
py-pyberny
py-pycsw
py-pydicom
py-PyFR
py-pygeodesy
py-pygeometa devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-pygmo2
py-pyked devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-pymatgen
py-pymatgen-analysis-alloys
py-pymbd
py-pymol
py-PyNE devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-pyosf
py-pyprecice
py-pyqubo
py-pysal
py-pyscf */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
py-pyteomics
py-qcelemental science/py-qcelemental: update 0.27.1 → 0.28.0 2024-07-12 22:17:53 -07:00
py-qcengine devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml 2024-07-07 16:05:33 +08:00
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
py-scoria
py-sdf
py-segregation
py-segyio
py-signac
py-SimpleSpectral
py-sklearn-pandas
py-skrebate
py-spaghetti
py-spglib science/{,py-}spglib: update 2.4.0 → 2.5.0 2024-07-12 02:01:04 -07:00
py-tensorflow
py-thewalrus
py-tobler
py-trainstation
py-trx-python science/py-trx-python: Fix build with removing setuptools from RUN_D 2024-06-24 22:17:01 +00:00
py-tweedledum
py-vedo science/py-vedo: update 2023.5.0 → 2024.5.2 2024-06-24 12:58:30 -07:00
py-veusz
py-xbout
pybrain
pynn
q
qbox science/qbox: update 1_76_4 → 1_77_0 2024-07-12 22:17:48 -07:00
qcl
qiskit-aer */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
qmcpack */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
qt6-quick3dphysics Qt6: Update to 6.7.2 2024-06-20 18:44:32 -04:00
quantum-espresso */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
quantum-espresso-pseudopotentials
quantum-jet */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
qwalk
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi science/R-cran-Epi: Update to 2.52 2024-07-13 12:39:44 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-netcdf
salome-configuration
salome-kernel
scidavis */*: Add ${PY_SETUPTOOLS} to BUILD_DEPENDS 2024-06-29 01:02:34 -04:00
sciplot
segyio
serac
shelxle science/shelxle: update 1.0.1650 → 1.0.1652 2024-06-20 18:53:01 -07:00
siconos */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
simgrid
simint
simlib
simple-dftd3 */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
simsmith
sirius */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
smoldyn
sparta
spglib science/{,py-}spglib: update 2.4.0 → 2.5.0 2024-07-12 02:01:04 -07:00
spheral science/spheral: update 2024.01.1 → 2024.06.1 2024-07-12 07:41:23 -07:00
step
tblite */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
teem
tfel all: drop support for FreeBSD 13.2 which reached EOL today 2024-07-01 22:27:23 +02:00
tfel-edf
thermofun
tinker science/tinker: Fix fetch: the release was re-rolled 2024-06-23 18:32:59 -07:00
trilinos
ttk
tweedledum
udunits
ukrmol+ */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
v_sim
vipster
vmd
voro++
votca
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb */*: bump PORTREVISION after the upgrade to OpenBLAS 2024-06-21 19:49:24 +02:00
yoda
zotero
zx
Makefile science/py-dwave-optimization: New port: DWave: Nonlinear models for industrial optimization problems 2024-07-15 00:19:26 -07:00