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freebsd-ports/science
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David Naylor e288e58754 Convert Mk/bsd.cran.mk to the Uses framework. 
PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
2013-12-28 10:28:40 +00:00
..
2d-rewriter
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
2dhf
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
abinit
science/abinit: depends explicitly on "python"
2013-12-15 12:49:28 +00:00
afni
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
2013-11-13 08:19:34 +00:00
avogadro
- Update from 1.1.0 to 1.1.1
2013-12-18 23:33:20 +00:00
bddsolve
Convert LIB_DEPENDS for ports depending on boost
2013-12-12 14:15:03 +00:00
bft
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
bodr
- Update to version 10
2013-11-02 17:34:59 +00:00
brian
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
buddy
Reset maintainer for llwang@infor.org
2013-12-18 10:38:33 +00:00
cdcl
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
cdf
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
cdo
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
cgnslib
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
checkmol
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
chemical-mime-data
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
chemtool
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
chemtool-devel
science/chemtool-devel: Unbreak on FreeBSD 10+
2013-12-25 22:08:13 +00:00
clhep
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
colt
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
crf++
- Remove NO_STAGE as these have been tested to be safe
2013-09-25 00:54:08 +00:00
dcl
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
devisor
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
dlpoly-classic
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
dtiquery
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
ecs
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
elmer-eio
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
elmer-hutiter
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
elmer-matc
science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate
2013-12-26 02:47:52 +00:00
elmer-meshgen2d
- Remove NO_STAGE as these have been tested to be safe
2013-09-25 00:54:08 +00:00
elmergrid
- Remove NO_STAGE as these have been tested to be safe
2013-09-25 00:54:08 +00:00
elmerpost
science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate
2013-12-26 02:47:52 +00:00
epte
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
euler
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
fastcap
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
fasthenry
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
felt
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
fisicalab
Added FisicaLab port.
2013-10-08 19:31:32 +00:00
flounder
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
fvcom
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
fvcom-mpi
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
fvm
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
g3data
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
gamess
uncomment MANUAL_PACKAGE_BUILD.
2013-11-29 01:45:50 +00:00
gchemutils
Add patch to unbreak with libc++ 10.0+.
2013-12-03 22:10:25 +00:00
gdis
Explicitly link libraries on 10 unmaintained ports
2013-10-07 23:40:23 +00:00
getdp
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
ghemical
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
ghmm
- Remove NO_STAGE as these have been tested to be safe
2013-09-25 00:54:08 +00:00
gnudatalanguage
- Upgrade to 1.3.18.
2013-11-30 15:08:05 +00:00
gramps
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
gromacs
- USES=fortran.
2013-12-27 16:39:52 +00:00
gsmc
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
gtamsanalyzer
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
gwyddion
- Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR)
2013-11-20 14:25:28 +00:00
h5utils
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
harminv
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
hdf
New LIB_DEPENDS syntax, USES=fortran, staging.
2013-12-27 16:55:28 +00:00
hdf5
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
hdf5-18
- Fix PKGNAME collision
2013-12-11 18:38:53 +00:00
hdf-java
- Convert to dos2unix.mk
2013-11-19 23:08:44 +00:00
hs-bio
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
InsightToolkit
Now when it builds on 10.x, drop maintainership
2013-12-21 00:28:51 +00:00
isaac-cfd
- USES=fortran gmake.
2013-12-27 20:26:21 +00:00
jmol
- Update to version 13.2.3 [1]
2013-11-07 16:53:33 +00:00
jstrack
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
kalzium
- Update from 1.1.0 to 1.1.1
2013-12-18 23:33:20 +00:00
kst2
Add patches to fix build on 10 and head
2013-12-09 15:08:42 +00:00
lamprop
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
libctl
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
libghemical
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
libint
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
libkml
- Update LICENSE
2013-12-26 21:48:54 +00:00
liblinear
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
liboglappth
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
libquantum
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
libsvm
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
libsvm-python
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
linsmith
- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st])
2013-10-22 14:01:38 +00:00
massxpert
- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st])
2013-10-22 14:01:38 +00:00
mbdyn
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
mcstas
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
medit
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
meep
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
mei
- Upgrade to 1.0.4;
2013-11-26 21:30:22 +00:00
minc
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
minc2
Mark as broken: does not build with newer hdf5 version:
2013-12-06 11:44:48 +00:00
mol2ps
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
mpb
- New LIB_DEPENDS syntax.
2013-12-27 21:28:47 +00:00
mpqc
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
mpqc-mpich
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
ncs
science/ncs: fix 'python' usage to remove implicity dependency of lang/python
2013-12-17 21:55:48 +00:00
netcdf
- Fix PKGNAME collision
2013-11-06 17:34:52 +00:00
netcdf3-ftn
- Fix PKGNAME collision
2013-11-06 17:35:50 +00:00
netcdf4
- Use CONFLICTS_INSTALL instead of CONFLICTS
2013-12-10 19:17:08 +00:00
netcdf-ftn
- Remove LATEST_LINK
2013-12-10 19:18:39 +00:00
nifticlib
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
openbabel
Add upstream patch to fix the build with libc++.
2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-3DBuilder
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Bond-Find
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Canonicalize
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Elements
Support STAGEDIR.
2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-Mopac
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-PDB
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SLN
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMARTS
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMILES
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-VRML
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-File-XYZ
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-FormulaPattern
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-InternalCoords
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Isotope
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-MacroMol
Support STAGEDIR.
2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Mok
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Mol
Support STAGEDIR.
2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Reaction
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Chemistry-Ring
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Geo-BUFR
Support STAGEDIR.
2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter
Support STAGEDIR.
2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea
- Support STAGEDIR
2013-09-30 20:59:03 +00:00
p5-Geo-ReadGRIB
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Geo-WebService-Elevation-USGS
Support STAGEDIR.
2013-11-06 01:32:11 +00:00
p5-PerlMol
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
p5-Physics-Unit
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
paje
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
paraview
Update freetype to 2.5.2.
2013-12-24 21:22:21 +00:00
peekabot
Convert LIB_DEPENDS for ports depending on boost
2013-12-12 14:15:03 +00:00
pnetcdf
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
psi3
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
psychopy
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
py-coards
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
py-DendroPy
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
py-h5py
science/py-h5py: update to 2.2.1
2013-12-13 19:59:42 +00:00
py-hcluster
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
py-mdp
Reset maintainer for llwang@infor.org
2013-12-18 10:38:33 +00:00
py-mlpy
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
py-netCDF4
- Convert to dos2unix.mk
2013-11-19 23:08:44 +00:00
py-obspy
- Fix build with distribute -> setuptools change
2013-11-27 19:21:00 +00:00
py-paida
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
py-pupynere
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
py-pyaixi
science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm
2013-12-08 14:12:47 +00:00
py-pydap
science/py-pydap: update to 3.1.1
2013-11-29 11:40:24 +00:00
py-pydicom
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
py-scikit-learn
Use PYDISTUTILS_AUTOPLIST.
2013-11-05 12:37:28 +00:00
py-scimath
- Update WWW:
2013-11-20 20:51:25 +00:00
py-scipy
- Fix distinfo
2013-11-18 15:36:42 +00:00
py-ws2300
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
pybrain
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
pycdf
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
pynn
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
pyteomics
Update to 2.2.1
2013-11-29 11:57:18 +00:00
pyteomics.biolccc
- Update WWW:
2013-11-20 20:51:25 +00:00
qcl
- Update to version 0.6.3
2013-10-30 17:57:33 +00:00
qtresistors
- Convert to USES=qmake (and other USES while I'm here)
2013-11-22 12:55:00 +00:00
R-cran-AMORE
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-bayesm
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-DCluster
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-e1071
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-eco
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-Epi
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-epicalc
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-snow
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
R-cran-som
Convert Mk/bsd.cran.mk to the Uses framework.
2013-12-28 10:28:40 +00:00
ruby-dcl
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
ruby-gphys
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
ruby-netcdf
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
rubygem-ai4r
- Add stage support
2013-10-30 02:56:33 +00:00
silo
- Update from 4.9 to 4.9.1
2013-12-18 23:27:40 +00:00
simlib
- Update to 3.02
2013-09-21 11:02:36 +00:00
step
Add my upstream commit that fixes the build with libc++.
2013-11-03 22:48:12 +00:00
svmlight
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
szip
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
udunits
- Strip shared library
2013-10-10 14:32:08 +00:00
v_sim
Update to libmpc version 1.0.1 which brings the following fixes:
2013-10-26 00:52:33 +00:00
veusz
- Update to 1.19.1
2013-12-22 14:33:44 +00:00
vmd
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
voro++
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
x11iraf
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
xfce4-equake-plugin
- Update MASTER_SITES macro, xfce4-equake-plugin is now hosted on
2013-10-31 17:11:01 +00:00
xmakemol
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
xmds
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
2013-09-20 22:48:30 +00:00
Makefile
science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm
2013-12-08 14:12:47 +00:00