Sunpoet Po-Chuan Hsieh 3f15a6f87f Remove outdated PERL_LEVEL check		2017-06-01 23:50:33 +00:00
..
ariadne
artemis	- Fix shebangs	2017-04-21 16:28:25 +00:00
avida	Mark some ports failing on power64. In cases where the error message	2017-05-13 03:35:51 +00:00
babel
bcftools	Update math/gsl to 2.3	2017-05-02 05:26:40 +00:00
bedtools	Mark some ports failing on armv6, for errors classified as "clang".	2017-05-27 15:07:11 +00:00
biococoa
biojava
blat	biology/blat: Fix build on DF (taken from dports)	2016-12-18 04:46:53 +00:00
bowtie	- Fix shebangs	2017-04-22 09:25:44 +00:00
bowtie2	Update devel/tbb to 2017.5	2017-03-07 12:44:41 +00:00
bwa	Mark some ports failing on armv6, for errors classified as "???".	2017-05-26 20:02:44 +00:00
cd-hit	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
cdbfasta	Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/	2017-01-20 20:33:30 +00:00
chemeq	biology/chemeq: fix build on GCC (taken from dports)	2016-12-18 04:22:26 +00:00
clustalw
consed
crux	Mark some ports failing on armv6, for errors classified as "???".	2017-05-26 20:02:44 +00:00
diamond	biology/diamond: Update to version 0.9.3	2017-05-29 15:24:01 +00:00
emboss
fasta
fasta3
fastdnaml
fastool	Never set WRKSRC when using USE_GITHUB.	2017-01-03 18:12:13 +00:00
fasttree	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
fastx-toolkit
fluctuate
garlic
gff2ps
gmap	Mark some ports failing on power64. In cases where the error message	2017-05-13 03:35:51 +00:00
gperiodic	Remove libintl.so.9 compatibility link that was added in r374303 to	2016-12-08 19:52:19 +00:00
grappa
hmmer
htslib
iolib	Mark some ports failing on power64. In cases where the error message	2017-05-13 03:35:51 +00:00
jalview
jellyfish	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
lagan
lamarc	biology/lamarc: Fix build on DF (taken from dports)	2016-12-18 04:34:33 +00:00
libgtextutils
libsbml	- Update to 5.15.0	2017-05-18 02:22:18 +00:00
linux-foldingathome
mafft
mapm3
migrate
molden	biology/molden: Chase recent upstream change of molden distfile.	2017-05-24 03:26:05 +00:00
mopac	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
mrbayes
mummer
muscle	Mark various leaf ports broken on aarch64, and, where appropriate, other	2016-11-11 09:31:02 +00:00
ncbi-blast+	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
ncbi-toolkit	Remove libjpeg.so.11 compatibility link that was added in r374303 to	2016-12-08 16:39:11 +00:00
njplot	biology/njplot: Add site in MASTER_SITES because package builders are	2016-11-28 15:19:42 +00:00
p5-AcePerl	Move -fPIC to where Linux puts it so it is limited to a single library.	2017-02-13 22:43:58 +00:00
p5-Bio-ASN1-EntrezGene	- Add LICENSE	2016-12-18 15:25:13 +00:00
p5-Bio-Coordinate	- Add p5-Bio-Coordinate 1.007001	2016-12-19 15:54:39 +00:00
p5-Bio-Das	- Add LICENSE	2016-12-18 15:25:18 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics	Remove outdated PERL_LEVEL check	2017-06-01 23:50:28 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo	- Add LICENSE_FILE	2016-12-18 15:25:22 +00:00
p5-Bio-SCF
p5-BioPerl	Remove outdated PERL_LEVEL check	2017-06-01 23:50:33 +00:00
p5-BioPerl-Run	Bump PORTREVISION for ports affected by the fix the last commit.	2017-01-31 16:21:45 +00:00
p5-transdecoder	Never set WRKSRC when using USE_GITHUB.	2017-01-03 18:12:13 +00:00
paml
phrap
phred
phylip
phyml	Update WWW	2017-05-30 15:22:06 +00:00
plink	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
plinkseq	Mark some ports failing on power64. In cases where the error message	2017-05-13 03:35:51 +00:00
primer3
protomol	Revision bump of all ports with USE_GL after consolidation of mesa-libs	2017-05-23 05:03:14 +00:00
psi88	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
py-biom-format	biology/py-biom-format: Update to version 2.1.6	2017-04-29 13:59:15 +00:00
py-biopython	- Update to 1.69	2017-05-03 12:39:28 +00:00
py-bx-python	bx-python is a python library and associated set of scripts to allow for rapid	2017-05-06 06:07:03 +00:00
py-pysam	- Update to 0.11.2.1	2017-05-23 22:04:11 +00:00
pycogent
pyfasta
python-nexus	- Update to 1.42	2017-03-01 07:00:37 +00:00
recombine
ruby-bio	- Update to 1.5.1	2017-05-07 15:44:34 +00:00
rubygem-bio	Update to 1.5.1	2017-02-06 23:03:17 +00:00
samtools
seaview	biology/seaview: Update version 4.6=>4.6.1	2017-04-11 18:58:18 +00:00
seqan
seqan1
seqan-apps	It is possible that r441426 will fix the build problem on armv6. Give	2017-05-21 23:37:34 +00:00
seqio
seqtools	Mark some ports failing on power64. In cases where the error message	2017-05-21 21:55:08 +00:00
sim4
slclust	Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/	2017-01-20 20:33:30 +00:00
ssaha	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
t_coffee	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
tinker	Bump PORTREVISIONs for ports depending on the canonical version of GCC and	2017-04-01 15:23:30 +00:00
treepuzzle
trimmomatic
tRNAscan-SE
ugene	Revision bump of all ports with USE_GL after consolidation of mesa-libs	2017-05-23 05:03:14 +00:00
vcftools	Assume "pkg-config zlib" works after 9.x reached EOL	2017-01-03 17:06:49 +00:00
velvet
wise	Remove libintl.so.9 compatibility link that was added in r374303 to	2016-12-08 19:52:19 +00:00
xmolwt	Remove libintl.so.9 compatibility link that was added in r374303 to	2016-12-08 19:52:19 +00:00
Makefile	bx-python is a python library and associated set of scripts to allow for rapid	2017-05-06 06:07:03 +00:00