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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-24 00:45:52 +00:00
freebsd-ports/biology
John Marino 4fa4056388 biology/mummer: Use OPSYS with OSVERSION
I don't think selecting clang as a function of OSVERSION is generally
desired, but if it's going to happen, make sure FreeBSD-specific
conditions are limited to FreeBSD by comparing OPSYS first.
2014-07-19 22:00:16 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava
blast Mark as broken: no distinfo provided 2014-06-22 22:06:01 +00:00
blat Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk 2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw
consed Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
crux
embassy - Mark BROKEN 2014-06-26 14:38:10 +00:00
emboss Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic biology/garlic: Stage properly to unbreak 2014-07-17 10:13:06 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS. 2014-07-15 14:54:54 +00:00
iolib
jalview
lagan
lamarc
libsbml
linux-foldingathome Stagify. 2014-07-06 16:05:34 +00:00
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer biology/mummer: Use OPSYS with OSVERSION 2014-07-19 22:00:16 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Stagify, remove BROKEN. 2014-06-07 01:54:41 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-bioperl
p5-bioperl-run Mark BROKEN: Fails to configure 2014-06-19 21:31:16 +00:00
paml
phd2fasta Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
phrap
phred
phylip
phyml
platon biology/platon: Unbreak by hosting known distfiles elsewhere 2014-07-13 11:27:44 +00:00
plink
plinkseq
povchem
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
pymol
python-nexus Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
recombine
ruby-bio
seaview
seqan Use gcc on all platforms. 2014-07-10 22:29:52 +00:00
seqio
seqtools Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist. 2014-07-15 23:11:12 +00:00
sim4
ssaha
t_coffee Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
tinker
treepuzzle
treeviewx Unbreak 2014-06-04 20:08:15 +00:00
tRNAscan-SE
ugene
velvet Fix shebang line in Perl and Python scripts. 2014-06-20 12:54:29 +00:00
wise
xmolwt
Makefile