Antoine Brodin 063f95149a Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk		2014-06-25 08:55:55 +00:00
..
ariadne
artemis	Support stage	2014-01-20 23:06:48 +00:00
avida
babel	Support stage	2014-01-15 22:44:13 +00:00
biococoa
biojava	- add stage support	2014-06-01 10:37:22 +00:00
blast	Mark as broken: no distinfo provided	2014-06-22 22:06:01 +00:00
blat	Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk	2014-06-25 08:55:55 +00:00
boinc-simap	Drop maintainership BOINC ports, old machine running them gave up.	2014-02-04 17:54:29 +00:00
chemeq	Stage support	2014-01-18 15:55:42 +00:00
clustalw	Multiple ports: reset maintainers	2014-05-26 02:33:38 +00:00
consed	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
crux	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
embassy	Use MAKE_CMD instead of GMAKE	2014-06-24 22:02:32 +00:00
emboss	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
fasta	- Add staging support	2014-03-24 09:01:39 +00:00
fasta3	biology/fasta3: Checked new distfile and regenerated distinfo to unbreak	2014-03-02 10:58:50 +00:00
fastdnaml	Support staging	2014-02-16 11:32:43 +00:00
fluctuate	Support staging	2014-02-16 11:35:00 +00:00
garlic	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
gff2ps	Add staging support	2014-03-23 17:43:41 +00:00
gmap
gperiodic	Add staging support	2014-03-23 18:09:23 +00:00
grappa
hmmer
iolib	- I forgot to svn add a new patch	2014-05-31 18:03:08 +00:00
jalview	Fix properties on pkg-plist	2014-01-21 23:18:05 +00:00
lagan
lamarc
libsbml	- Update to 5.10.0	2014-05-13 07:04:17 +00:00
linux-foldingathome
mafft	Add DOCS and EXAMPLE options to biology/mafft	2014-05-31 04:18:18 +00:00
mapm3
migrate	- Stagify; cleanup Makefile and reorder the knobs a bit	2014-01-29 12:08:29 +00:00
molden	Catch a couple of missing convertsion to :tu/:tl	2014-05-05 11:15:53 +00:00
mopac	- Add staging support	2014-03-23 18:10:41 +00:00
mrbayes
mummer	Reset the 99 ports still listed under sylvio@	2014-06-11 18:55:29 +00:00
muscle	Update to 3.8.31.	2014-06-17 21:36:06 +00:00
ncbi-toolkit	Add staging support	2014-03-23 20:50:54 +00:00
njplot	- add stage support	2014-06-01 11:26:39 +00:00
ortep3	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
p5-AcePerl	Remove all the bootstrap files (.bs) from the plists.	2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite	- fix pkg-plist	2014-01-30 07:34:25 +00:00
p5-Bio-GFF3	- Fix PLIST	2014-03-26 14:23:09 +00:00
p5-Bio-Glite
p5-Bio-Graphics	Stagify, remove BROKEN.	2014-06-07 01:54:41 +00:00
p5-Bio-MAGETAB	- update to 1.31	2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS	- Stage support	2014-01-31 12:47:06 +00:00
p5-Bio-Phylo
p5-Bio-SCF	Remove all the bootstrap files (.bs) from the plists.	2014-06-10 12:14:12 +00:00
p5-bioperl	- Update to 1.6.923	2014-05-30 15:46:05 +00:00
p5-bioperl-run	Mark BROKEN: Fails to configure	2014-06-19 21:31:16 +00:00
paml	- Update to 4.8	2014-04-05 10:56:52 +00:00
phd2fasta	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
phrap	Replace maintainer's email address with one that seems to work	2014-05-10 18:07:52 +00:00
phred	Replace maintainer's email address with one that seems to work	2014-05-10 18:07:52 +00:00
phylip	The FreeBSD x11@ and graphics team proudly presents	2014-04-16 18:28:47 +00:00
phyml	- Stage support	2014-01-31 12:32:55 +00:00
platon	Mark as broken: no distinfo provided	2014-06-22 22:07:25 +00:00
plink	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
plinkseq	Convert to dos2unix	2014-03-07 11:37:35 +00:00
povchem
primer3	Quote ${CC} and similar variables in MAKE_ARGS.	2014-05-20 19:32:39 +00:00
protomol	The FreeBSD x11@ and graphics team proudly presents	2014-04-16 18:28:47 +00:00
psi88	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
py-biopython	- Stage	2014-04-27 01:59:47 +00:00
pycogent	- Stage support [1]	2014-05-02 14:00:13 +00:00
pyfasta	- Update to 0.5.2	2014-04-06 04:05:43 +00:00
pymol	The FreeBSD x11@ and graphics team proudly presents	2014-04-16 18:28:47 +00:00
python-nexus	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
recombine	- Support staging	2014-02-16 11:39:42 +00:00
ruby-bio	Support stage	2014-04-07 13:01:26 +00:00
seaview	- Update to 4.5.2	2014-06-04 06:28:56 +00:00
seqan	- add stage support	2014-06-01 11:42:17 +00:00
seqio	Support staging	2014-02-16 11:42:09 +00:00
seqtools	Remove all space characters from Makefile assignments.	2014-06-08 19:51:27 +00:00
sim4	Support staging	2014-02-16 11:43:07 +00:00
ssaha	biology/ssaha: undeprecate, this port fetches and builds fine.	2014-03-09 09:39:50 +00:00
t_coffee	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
tinker	- Un-break fetch stage: the name scheme of the source tarballs has changed	2014-04-22 19:28:18 +00:00
treepuzzle
treeviewx	Unbreak	2014-06-04 20:08:15 +00:00
tRNAscan-SE	Support stage	2014-05-05 10:26:15 +00:00
ugene	Update to version 1.13.1.	2014-03-07 07:39:20 +00:00
velvet	Fix shebang line in Perl and Python scripts.	2014-06-20 12:54:29 +00:00
wise	- Add staging support	2014-03-24 10:46:35 +00:00
xmolwt	Add staging support	2014-03-24 11:06:56 +00:00
Makefile	Remove expired ports:	2014-04-18 11:17:45 +00:00