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mirror of https://git.FreeBSD.org/ports.git synced 2025-01-24 09:25:01 +00:00
freebsd-ports/science
Mathieu Arnold f6d56007b9 Remove all := from BUILD_DEPENDS, here are never needed.
While there, cleanup, and sort depends.

When build and run dependencies are the same, there are three ways to
avoid duplicating the list while not adding the framework added
BUILD_DEPENDS to the RUN_DEPENDS.  In order of preference, they are:

1) use RUN_DEPENDS to set BUILD_DEPENDS:

BUILD_DEPENDS=	${RUN_DEPENDS}
RUN_DEPENDS=	foo:bar/baz

2) create another variable and use it:

MY_DEPENDS= foo:bar/baz
BUILD_DEPENDS=	${MY_DEPENDS}
RUN_DEPENDS=	${MY_DEPENDS}

3) use BUILD_DEPENDS to set RUN_DEPENDS and force evaluation:

BUILD_DEPENDS=	foo:bar/baz
RUN_DEPENDS:=	${BUILD_DEPENDS}

Sponsored by:	Absolight
2018-07-09 08:40:17 +00:00
..
2d-rewriter
abinit science/abinit: Update 8.8.2 -> 8.8.3 2018-06-21 05:43:38 +00:00
afni Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
aircraft-datcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ALPSCore devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
antioch Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
atompaw science/atompaw: Update 4.0.0.14 -> 4.1.0.3 2018-07-09 00:31:17 +00:00
avogadro Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
bddsolve devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bft
bodr
brian Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
buddy
cdcl
cdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cdo Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
cgnslib - Add missing depend on libX11 2018-03-22 08:33:19 +00:00
cgribex
checkmol - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
chemical-mime-data
chemps2 science/chemps2: Update 1.8.6 -> 1.8.7 2018-03-26 09:47:56 +00:00
chemtool science/chemtool: Update 1.6.11 -> 1.6.14 2018-03-24 01:06:20 +00:00
chemtool-devel Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
clhep science/clhep: Update version 2.3.1.1=>2.4.0.4 2018-04-24 20:51:38 +00:00
clipper New port: science/clipper: Libraries for the organisation of crystallographic data 2018-07-08 01:27:10 +00:00
colt Mark as broken on powerpc64. 2018-06-08 02:35:17 +00:00
coot New port: science/coot: Crystallographic Object-Oriented Toolkit 2018-07-08 04:45:25 +00:00
crf++
dcl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
devisor
dft_tools New port: science/dft_tools: Interface to DFT codes in TRIQS 2018-06-17 02:42:52 +00:00
dkh Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
dlib-cpp Upgrade science/dlib-cpp and science/py-dlib to 19.13. 2018-05-28 11:34:44 +00:00
dlpoly-classic Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
eccodes Clean up Makefile 2018-06-28 21:26:47 +00:00
ecs Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
epte
erd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fastcap
fasthenry
fisicalab Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
fsom fsom: Tiny C library for managing SOM (Self-Organizing Maps) neural networks 2018-04-16 18:15:30 +00:00
fvcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvcom-mpi Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvm - Update WWW 2018-03-31 09:33:26 +00:00
gchemutils science/gchemutils: mark BROKEN if XUL option is chosen 2018-06-23 10:41:05 +00:00
gdma Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
getdp Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
ghemical Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ghmm
gnudatalanguage Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
gramps science/gramps: Tidy up the USE_PYTHON settings 2018-02-26 15:06:56 +00:00
grib_api Update to 1.26.1 2018-05-17 18:29:50 +00:00
gromacs science/gromacs: Chase the changed tarball 2018-06-16 21:07:10 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils science/h5utils: Update to 1.13.1 2018-03-22 04:45:38 +00:00
harminv Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
hdf - Switch to new test framework 2018-04-29 08:33:52 +00:00
hdf5 Fix MASTER_SITES 2018-06-27 20:11:59 +00:00
hdf5-18 Fix plist whith FORTRAN option. 2018-05-07 19:21:09 +00:00
hypre Mark broken on powerpc64. 2018-06-08 02:39:46 +00:00
iboview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
InsightToolkit Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
isaac-cfd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
jstrack
kalzium Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
kalzium-kde4 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
kst2 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
lamprop science/lamprop: Unbreak by fixing the python interpreter in the shebang 2018-03-13 08:27:23 +00:00
libaec Convert to USE_GITLAB 2018-03-14 18:11:33 +00:00
libccp4 New port: science/libccp4: Protein X-ray crystallography toolkit 2018-07-08 00:24:55 +00:00
libcint science/libcint: Update 3.0.12 -> 3.0.13 2018-06-15 08:48:31 +00:00
libctl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libefp
libgeodecomp Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
libghemical Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libint Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libkml Convert PORTEXAMPLES=* to PLIST entries 2018-05-19 11:06:20 +00:00
liblinear Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
liboglappth Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
libquantum
libssm science/libssm: Version number correcton 1.4 -> 1.4.0 2018-07-08 15:34:16 +00:00
libsvm Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
libsvm-python
libxc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
linsmith Make libgnome and libgnomeui not implying esound dependency 2018-03-26 12:38:56 +00:00
massxpert Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
mbdyn science/mbdyn: Take maintainership. 2018-06-22 08:08:30 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps science/mcxtrace-comps: remove comment line 2018-05-07 19:43:04 +00:00
medit
meep Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
mei - Switch to new test framework 2018-04-26 08:33:48 +00:00
metaf2xml
metaphysicl New port: science/metaphysicl: Metaprogramming, operator-overloaded classes for numerical simulations 2018-04-18 04:59:15 +00:00
minc2
mmdb2 science/mmdb2: Update 2.0.12 -> 2.0.16 2018-07-07 23:40:51 +00:00
mol2ps - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
MOOSE-neural-simulator Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
mpb Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpqc Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
mpqc-mpich Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ncs science/ncs: Unbreak 2018-03-13 09:50:42 +00:00
netcdf Fix packaging when DAP option is disabled 2018-04-14 23:59:26 +00:00
netcdf-cxx
netcdf-fortran Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
nifticlib
openbabel science/openbabel: Take maintainership; Add the GUI option using wxWidgets-3.0 2018-06-12 07:39:34 +00:00
openkim - Switch to new test framework 2018-04-23 08:33:47 +00:00
openstructure New port: science/openstructure: Molecular modelling and visualization environment 2018-07-09 04:41:17 +00:00
p5-Algorithm-SVMLight Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-3DBuilder Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Bond-Find Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Canonicalize Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Elements Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-MDLMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-Mopac Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-PDB Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SLN Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMARTS Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMILES Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-VRML Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-XYZ Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-FormulaPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-InternalCoords Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Isotope Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MacroMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MidasPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mok Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mol - Add LICENSE 2018-06-26 09:07:15 +00:00
p5-Chemistry-Pattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Reaction Add LICENSE 2018-06-05 18:57:18 +00:00
p5-Chemistry-Ring Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-BUFR Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter-iArea Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-ReadGRIB Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-WebService-Elevation-USGS Update WWW 2018-05-27 20:15:16 +00:00
p5-Mcstas-Tools Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
p5-PerlMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Physics-Unit Update WWW 2018-05-27 20:15:16 +00:00
paje
paraview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
pcmsolver Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
PETSc science/PETSc: Update 3.9.2 -> 3.9.3 2018-07-04 20:25:29 +00:00
pnetcdf Add OPENMPI3 option 2018-05-20 18:56:03 +00:00
psychopy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pulseview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
py-abipy science/py-abipy: Change FLAVOR -> PY_FLAVOR 2018-06-19 01:18:08 +00:00
py-cdo Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-coards Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-DendroPy
py-dlib Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
py-gsd New port: science/py-gsd: GSD (General Simulation Data) file format for Python 2018-05-13 20:32:41 +00:00
py-h5py Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-hcluster Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-kinematics Add py-kinematics 0.0.7 2018-06-24 20:05:42 +00:00
py-MDAnalysis Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-MDAnalysisTests Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mdp Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mlpy Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
py-mmtf-python Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-netCDF4 science/py-netCDF4: Add USE_PYTHON=concurrent 2018-06-19 00:03:37 +00:00
py-obspy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-OpenFermion science/py-OpenFermion: Update 0.6 -> 0.7 2018-06-26 19:42:18 +00:00
py-openpiv Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-paida Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pupynere Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyaixi Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pydicom - Update to 1.1.0 2018-06-22 03:06:51 +00:00
py-pymatgen Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pymol Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyosf Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-PyQuante Mark as broken on aarch64. 2018-06-25 04:54:53 +00:00
py-pysal Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics.biolccc Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-qspin Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-quantities science/py-quantities: Update 0.12.1 -> 0.12.2 2018-07-04 19:21:46 +00:00
py-rmf New port: science/py-rmf: Library to support reading and writing of Rich Molecular Format files 2018-07-01 05:22:27 +00:00
py-ScientificPython science/py-ScientificPython: Change WWW URL; Change to CHEESESHOP 2018-06-30 16:49:08 +00:00
py-scikit-fuzzy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-learn Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-sparse Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scimath Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scipy - Update to 1.1.0 2018-05-24 12:23:27 +00:00
py-scoria Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-SimpleSpectral New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00
py-spglib science/py-spglib: Fix typo in COMMENT 2018-06-19 02:20:42 +00:00
py-tensorflow Correction to r473019: Revert the unintended change to the 'Created by' headers. 2018-06-22 08:28:00 +00:00
py-veusz Remove all := from BUILD_DEPENDS, here are never needed. 2018-07-09 08:40:17 +00:00
py-ws2300 science/py-ws2300: Unbroke the port. 2018-02-26 04:16:14 +00:00
pybrain Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pycdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pynn Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
qcl
qtresistors Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
R-cran-AMORE Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-bayesm Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-cmprsk Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-DCluster Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-e1071 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-eco Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-Epi - Update to 2.30 2018-05-17 06:30:11 +00:00
R-cran-epicalc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-etm - Update to 0.6-2.1 2018-06-20 03:34:55 +00:00
R-cran-fastICA Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-kernlab - Update to 0.9-26 2018-05-09 00:53:54 +00:00
R-cran-snow Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-som Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-udunits2 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
rdkit science/rdkit: Update 2018_03_1 -> 2018_03_2 2018-06-17 19:15:55 +00:00
rmf New port: science/rmf: Library to support reading and writing of Rich Molecular Format files 2018-06-29 09:04:22 +00:00
rubygem-ai4r
rubygem-cdo Update to 1.3.6 2018-04-04 18:53:54 +00:00
rubygem-rgeo Add rubygem-rgeo 1.0.0 2018-04-07 16:32:18 +00:00
rubygem-rgeo-geojson Add rubygem-rgeo-geojson 2.0.0 2018-04-07 16:32:45 +00:00
rubygem-rgeo-proj4 Add rubygem-rgeo-proj4 1.0.0 2018-04-07 16:33:14 +00:00
rubygem-rgeo-shapefile Add rubygem-rgeo-shapefile 1.0.0 2018-04-07 16:33:40 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
simlib science/simlib: Fix build 2018-07-07 21:09:10 +00:00
simsmith
spglib New port: science/spglib: C library for finding and handling crystal symmetries 2018-06-15 17:42:24 +00:00
step Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
step-kde4 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
svmlight
szip Auto-accept SZIP license, otherwise hundreds of ports are skipped 2018-06-06 12:13:19 +00:00
tfel Adjust USES to fix builds on gcc-based architectures. 2018-06-18 19:03:03 +00:00
triqs science/triqs: Broken on i386 2018-06-21 05:57:43 +00:00
udunits
v_sim Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
vmd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
voro++
xfce4-equake-plugin
xmakemol
Makefile New port: science/openstructure: Molecular modelling and visualization environment 2018-07-09 04:41:17 +00:00