Tim Bishop b9073575f7 - New upstream version; two patches incorporated. ...

PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)

2005-12-10 14:04:33 +00:00

..

ariadne

…

artemis

- Fix fetch problems

2005-12-05 16:57:26 +00:00

avida

- Add SHA256

2005-11-24 00:04:00 +00:00

babel

- Add SHA256

2005-11-24 00:04:00 +00:00

biojava

…

blast

From the PR:

2005-03-18 13:01:07 +00:00

chemeq

- Mark it as DEPRECATED - master site disapeared

2005-11-11 14:40:25 +00:00

clustalw

…

coalesce

- Add SHA256

2005-11-24 00:04:00 +00:00

crimap

…

deft

- Mark it as DEPRECATED - master site disapeared

2005-11-11 14:40:32 +00:00

distribfold

- Add SHA256

2005-11-24 00:04:00 +00:00

dna-qc

…

embassy

- Update to 2.10.0

2005-05-29 18:26:25 +00:00

emboss

Mass-conversion to the USE_AUTOTOOLS New World Order. The code present

2005-11-15 06:52:12 +00:00

fasta

- Add SHA256

2005-11-24 00:04:00 +00:00

fasta3

…

fastdnaml

- Add SHA256

2005-11-24 00:04:00 +00:00

finchtv

Update to 1.3.1

2005-12-06 21:23:04 +00:00

flip

Mark DEPRECATED since upstream is unmaintained and mastersite is gone.

2005-10-29 14:09:33 +00:00

fluctuate

- Add SHA256

2005-11-24 00:04:00 +00:00

garlic

At Kris's request, back out the MACHINE_ARCH spelling correction until

2005-04-12 03:26:56 +00:00

genpak

- Add SHA256

2005-11-24 00:04:00 +00:00

gff2ps

…

gperiodic

- Add SHA256

2005-11-24 00:04:00 +00:00

grappa

- update grappa to 2.0

2005-04-15 18:48:57 +00:00

hmmer

…

kinemage

…

L-Breeder

- Mark it as DEPRECATED (mastersite disapeared)

2005-11-11 14:29:09 +00:00

lamarc

…

libgenome

- Add SHA256

2005-11-24 00:04:00 +00:00

lsysexp

Bump PORTREVISION to chase the glib20 shared library update.

2005-11-05 05:22:06 +00:00

migrate

- Add SHA256

2005-11-24 00:04:00 +00:00

molden

- Unbreak by updating to 4.4

2005-12-01 14:42:44 +00:00

mopac

At Kris's request, back out the MACHINE_ARCH spelling correction until

2005-04-12 03:26:56 +00:00

nab

- Fix the packing list [1]

2005-04-29 22:14:29 +00:00

ncbi-toolkit

- Update to 20050605

2005-10-11 22:33:34 +00:00

ortep3

…

p5-AcePerl

- Change maintainer's email address.

2005-04-11 20:34:36 +00:00

p5-Bio-ASN1-EntrezGene

Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for

2005-10-15 20:09:50 +00:00

p5-Bio-Das

Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from

2005-11-26 03:40:59 +00:00

p5-bioperl

Add conflicst:

2005-12-04 22:11:44 +00:00

p5-bioperl-devel

Add conflicts:

2005-12-04 22:12:48 +00:00

paml

Update to 3.14b

2005-11-10 01:21:42 +00:00

phylip

Bump PORTEPOCH. 3.6 < 3.62

2005-04-22 12:08:12 +00:00

platon

At Kris's request, back out the MACHINE_ARCH spelling correction until

2005-04-12 03:26:56 +00:00

povchem

- Drop old povchem.c checksum

2005-11-24 00:02:29 +00:00

primer3

- Update to 1.0.0

2005-06-13 04:31:34 +00:00

psi88

…

py-biopython

Update to 1.41

2005-11-11 01:15:35 +00:00

pymol

Update to 0.9.8

2005-10-10 09:08:22 +00:00

rasmol

- Add SHA256

2005-11-24 00:04:00 +00:00

recombine

- Add SHA256

2005-11-24 00:04:00 +00:00

ruby-bio

- Add SHA256

2005-11-24 00:04:00 +00:00

seaview

- New upstream version; two patches incorporated.

2005-12-10 14:04:33 +00:00

seqio

…

sim4

- Add SHA256

2005-11-24 00:04:00 +00:00

t_coffee

- Update to 3.18 to make fetchable again

2005-12-06 15:10:08 +00:00

tinker

- Add SHA256

2005-11-24 00:04:00 +00:00

treepuzzle

At Kris's request, back out the MACHINE_ARCH spelling correction until

2005-04-12 03:26:56 +00:00

treeviewx

Update to 0.5.1

2005-12-06 02:00:55 +00:00

tRNAscan-SE

…

wise

…

xdrawchem

Checking MACHINE_ARCH is deprecated.

2005-09-23 16:21:45 +00:00

xmolwt

…

Makefile

- Re-add p5-bioperl-devel, development version of biology/p5-bioperl

2005-12-02 21:40:12 +00:00