Yuri Victorovich 8c5670fd47 science/{,py-}phonopy: update 2.23.1 → 2.24.3 ... Reported by: portscout		2024-06-19 02:56:10 -07:00
..
2d-rewriter
abinit	science/abinit: update 10.0.3 → 10.0.5	2024-05-02 01:57:59 -07:00
afni	science/afni: update to 24.1.19	2024-06-15 20:43:08 +02:00
agrum	science/agrum: update 1.13.1 → 1.14.0	2024-06-14 15:46:35 -07:00
aircraft-datcom
ALPSCore
antioch
apbs
arbor
ascent
atompaw
avogadro2
avogadrolibs
axom
bagel
bddsolve
berkeleygw	science/berkeleygw: update 3.0.1 → 4.0	2024-06-15 02:12:39 -07:00
bodr
bout++
bout++-merging-filaments
buddy
cantera
cardioid
cdf
cdk
cdo	science/cdo: Update to 2.4.1	2024-05-28 18:21:25 +08:00
cgnslib
cgribex	science/cgribex: Update to 2.0.0	2024-04-10 15:19:33 +08:00
checkmol	*/*: Bump PORTREVISION. lang/fpc was updated to 3.2.3	2024-06-16 03:26:36 -05:00
chemical-mime-data
chemicalfun
chemps2
chemtool
chemtool-devel	*/*: Remove GNU_CONFIGURE_MANPREFIX after move man pages to share/man	2024-04-14 10:41:16 +01:00
chimes-calculator
ChipmunkPhysics
chrono
cif-tools
clhep
clipper
code_saturne
colt
conduit	science/conduit: update 0.8.8 → 0.9.1	2024-04-05 02:15:39 -07:00
coordgenlibs
cp2k
cp2k-data
csvtk	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
dakota
dalton
dd_package
devisor
dftbplus	science/{,py-}dftbplus: update 23.1 → 24.1	2024-05-28 01:12:11 -07:00
dftd3
dftd4	science/{,py-}dftd4: update 3.5.0 → 3.6.0	2024-04-21 15:18:41 -07:00
dimod	science/{,py-}dimod: update 0.12.14 → 0.12.15	2024-06-14 02:11:33 -07:00
dirac	science/dirac: Broken on i386	2024-04-27 00:53:00 -07:00
dkh
dlib-cpp
drawxtl
dssp
dvc
dwave-preprocessing
dynare	*/*: chase SuiteSparse’s upgrade	2024-04-29 22:08:56 +02:00
eccodes	science/eccodes: Update to 2.35.0	2024-04-13 17:31:34 +08:00
elk	science/elk: update 9.5.14 → 9.6.8	2024-06-17 21:17:26 -07:00
elmerfem	graphics/tiff: Update to 4.6.0	2024-04-27 14:44:59 +02:00
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet
feff10
fleur
frontistr
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib
gchemutils
gcp
gdma
geant4	science/geant4: Update to 11.2.1	2024-05-23 18:10:54 +02:00
gemmi	science/{,py-}gemmi: update 0.6.5 → 0.6.6	2024-05-29 01:49:15 -07:00
getdp
ghemical
ghmm
gnudatalanguage	science/gnudatalanguage: upgrade to v1.0.6	2024-05-23 18:02:43 +02:00
gpaw-setups
gramps	science/gramps: Update to 5.2.2	2024-04-07 08:47:46 +01:00
grib_api
gromacs	science/gromacs: Minor correction	2024-05-27 15:52:35 -07:00
gsmc
gtamsanalyzer
h5utils	science/h5utils: Drop USES=autoreconf	2024-04-14 13:03:19 +01:00
h5z-zfp
harminv
hdf
hdf5	science/hdf5: Update WWW	2024-03-23 22:30:46 +08:00
hdf5-18	*/*: Remove incorrect libtool dependency	2024-05-26 12:52:26 +02:00
hdf5-110	science/hdf5-110: Update to 1.10.11	2024-06-19 03:52:57 +08:00
healpix
helfem
hepmc3	science/hepmc3: update 3.2.6 → 3.2.7	2024-04-21 15:17:18 -07:00
highfive
hypre	science/hypre: don’t use internal BLAS but switch to OpenBLAS	2024-06-15 11:12:24 +02:00
iboview
InsightToolkit	science/InsightToolkit: Fix build with CMake 3.29	2024-05-07 05:05:20 -04:00
InsightToolkit501	science/InsightToolkit501: Fix build om i386	2024-06-02 13:43:43 -07:00
isaac-cfd
jdftx
jmol
jstrack
kalzium
kim-api
kplib	science/kplib: Fix build by removing -Werror promoting a warrning to an error	2024-04-11 01:17:15 -07:00
kst2	graphics/tiff: Update to 4.6.0	2024-04-27 14:44:59 +02:00
lammps	graphics/tiff: Update to 4.6.0	2024-04-27 14:44:59 +02:00
lamprop
latte
libaec	science/libaec: Do not build testing unconditionally	2024-04-06 08:00:10 +08:00
libccp4
libcifpp
libcint
libctl
libecpint
libefp
libgetar
libghemical
libgridxc
libint
libint2
libint2-psi4
libkml
liblinear
libmbd
libmsym
libnegf
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc	science/libxc: update 6.0.0 → 6.2.2	2024-04-04 01:05:02 -07:00
liggghts	graphics/tiff: Update to 4.6.0	2024-04-27 14:44:59 +02:00
linux-zotero
luscus
m-aneos
madness
maeparser
massxpert
mbdyn	*/*: chase SuiteSparse’s upgrade	2024-04-29 22:08:56 +02:00
mcpl
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
mercantile
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps	*/*: Bump PORTREVISION. lang/fpc was updated to 3.2.3	2024-06-16 03:26:36 -05:00
molgif	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
molscript
molsketch
mopac
mp2d
mpb
mpqc	science/mpqc: Move manpages to share/man	2024-03-25 21:41:04 +03:00
mrchem
mrcpp
msms
mstore	science/mstore: update 0.2.0 → 0.3.0	2024-06-14 02:11:34 -07:00
multicharge
multiwfn	science/multiwfn: Fix build failure due to missing makefile dependency	2024-05-06 12:28:15 -07:00
mutationpp
namd
ncrystal
nest	science/nest: Broken on armv7	2024-05-26 14:57:09 -07:00
netcdf	*/*: Remove GNU_CONFIGURE_MANPREFIX=${PREFIX}/share after 9fd7ee1cdf	2024-04-13 21:03:19 +08:00
netcdf-cxx	science/netcdf-cxx: Remove unnecessary substitution	2024-03-23 22:30:46 +08:00
netcdf-fortran	science/netcdf-fortran: Update to 4.6.1	2024-04-18 20:48:10 +08:00
nifticlib
nlcglib	devel/kokkos: update 4.1.00 → 4.3.00	2024-04-21 11:28:27 -07:00
nwchem	*/*: clean up after swith to cmake:indirect	2024-04-11 12:27:00 +03:00
nwchem-data	science/nwchem-data: update 7.2.0 → 7.2.2	2024-04-12 17:17:24 -07:00
ocean	science/ocean: Fix build by adding MAKE_JOBS_UNSAFE	2024-04-07 12:17:13 -07:00
octopus	graphics/tiff: Update to 4.6.0	2024-04-27 14:44:59 +02:00
openbabel
openems
openkim-models
openmc	science/openmc: update 0.13.3 → 0.14.0	2024-04-06 01:34:42 -07:00
openmodelica	science/openmodelica: update 1.22.3 → 1.23.0	2024-06-10 19:57:36 -07:00
openmolcas	science/openmolcas: update 23.06 → 24.06	2024-06-16 09:56:31 -07:00
openmx	science/openmx: update 3.8.5 → 3.9.9	2024-06-16 18:20:36 -07:00
opensim-core
opensph	devel/onetbb: Update to 2021.12.0	2024-04-17 13:28:34 +02:00
opsin
optench
orthanc	science/orthanc: update 1.11.0 → 1.12.3	2024-05-05 23:12:53 -07:00
orthanc-dicomweb
orthanc-mysql
orthanc-postgresql
orthanc-webviewer
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Calc
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-Coordinates-Transform
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	devel/onetbb: Update to 2021.12.0	2024-04-17 13:28:34 +02:00
paje
paraview	math/openturns: update 1.22 → 1.23	2024-06-10 01:27:09 -07:00
pastix
pcmsolver
PETSc	science/PETSc: update 3.21.1 → 3.21.2	2024-05-30 03:45:43 -07:00
phonopy	science/{,py-}phonopy: update 2.23.1 → 2.24.3	2024-06-19 02:56:10 -07:00
plumed
pnetcdf	*/*: Remove GNU_CONFIGURE_MANPREFIX=${PREFIX}/share after 9fd7ee1cdf	2024-04-13 21:03:19 +08:00
polytope
precice
psi4	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
pulseview
py-abipy
py-access	science/py-access: Convert to USE_PYTHON=pep517	2024-05-13 22:06:37 +08:00
py-arbor
py-arch
py-asap3
py-asdf	science/py-asdf: Convert to USE_PYTHON=pytest	2024-04-09 04:17:28 +08:00
py-asdf-standard	science/py-asdf-standard: Update to 1.1.1	2024-03-23 22:49:29 +08:00
py-asdf-transform-schemas	science/py-asdf-transform-schemas: Update to 0.5.0	2024-03-23 22:49:30 +08:00
py-ase
py-atomium	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-avogadrolibs
py-boutdata
py-boututils
py-cdo	science/py-cdo: Convert to USE_PYTHON=pep517	2024-05-13 22:06:39 +08:00
py-cfgrib	science/py-cfgrib: Update to 0.9.12.0	2024-05-29 04:20:07 +08:00
py-chainer
py-chainer-chemistry
py-chempy	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-coards	science/py-coards: Convert to USE_PYTHON=pep517	2024-05-13 22:06:41 +08:00
py-DendroPy	science/py-DendroPy: Update to 5.0.1	2024-06-03 07:29:16 +00:00
py-dftbplus	science/{,py-}dftbplus: update 23.1 → 24.1	2024-05-28 01:12:11 -07:00
py-dftd4	science/{,py-}dftd4: update 3.5.0 → 3.6.0	2024-04-21 15:18:41 -07:00
py-dimod	science/{,py-}dimod: update 0.12.14 → 0.12.15	2024-06-14 02:11:33 -07:00
py-dipy	science/py-dipy: update 1.8.0 → 1.9.0	2024-04-22 01:25:11 -07:00
py-dlib	*/*: convert to cmake:indirect	2024-04-11 12:16:53 +03:00
py-dwave-cloud-client	devel/py-python-dateutil: Move devel/py-dateutil to devel/py-python-dateutil	2024-04-13 22:47:51 +08:00
py-dwave-greedy
py-dwave-hybrid
py-dwave-inspector
py-dwave-neal
py-dwave-networkx	science/py-dwave-networkx: update 0.8.14 → 0.8.15	2024-06-15 02:12:44 -07:00
py-dwave-ocean-sdk
py-dwave-preprocessing
py-dwave-samplers
py-dwave-system
py-dwave-tabu
py-dwavebinarycsp
py-earthpy
py-eccodes	science/py-eccodes: Convert to USE_PYTHON=pep517	2024-05-13 22:06:42 +08:00
py-emmet-core
py-esda
py-fresnel	devel/onetbb: Update to 2021.12.0	2024-04-17 13:28:34 +02:00
py-gemmi	science/{,py-}gemmi: update 0.6.5 → 0.6.6	2024-05-29 01:49:15 -07:00
py-geolinks	science/py-geolinks: Convert to USE_PYTHON=pep517	2024-05-13 22:06:44 +08:00
py-geomet
py-geometer	science/py-geometer: Convert to USE_PYTHON=pep517	2024-05-13 22:06:46 +08:00
py-geometric
py-gpaw
py-GPy	science/py-GPy: update 1.10.0 → 1.13.1	2024-06-04 19:29:46 -07:00
py-GPyOpt
py-gsd
py-h5json
py-h5py	science/py-h5py: Update to 3.11.0	2024-04-13 17:31:41 +08:00
py-h5pyd	science/py-h5pyd: New port: h5py compatible client lib for HDF REST API	2024-04-07 11:37:59 -07:00
py-HepMC3
py-hiphive
py-HofstadterTools	science/py-HofstadterTools: New port: Package for analyzing the Hofstadter model of particles in the lattice	2024-04-19 12:28:24 -07:00
py-hoomd-blue	devel/onetbb: Update to 2021.12.0	2024-04-17 13:28:34 +02:00
py-inequality
py-ipygany	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-jupyter_jsmol	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-kim-query
py-kimpy
py-kinematics	science/py-kinematics: Convert to USE_PYTHON=pep517	2024-05-13 22:06:47 +08:00
py-kliff
py-kpLib
py-liac-arff	science/py-liac-arff: Convert to USE_PYTHON=pep517	2024-05-13 22:06:49 +08:00
py-libgetar
py-libpysal
py-lifelines
py-MDAnalysis	science/py-MDAnalysis{,Tests}: update 2.3.0 → 2.7.0	2024-05-06 14:06:15 -07:00
py-MDAnalysisTests	science/py-MDAnalysis{,Tests}: update 2.3.0 → 2.7.0	2024-05-06 14:06:15 -07:00
py-mdp
py-meshio
py-mmcif
py-mmtf-python
py-molmod
py-moltemplate
py-mp-api
py-mpcontribs-client
py-mrchem
py-ncrystal
py-netCDF4
py-netcdf-flattener	science/py-netcdf-flattener: Convert to USE_PYTHON=pep517	2024-05-13 22:06:50 +08:00
py-nglview	science/py-nglview: update 3.0.7 → 3.1.2	2024-04-20 01:34:04 -07:00
py-nibabel	science/py-nibabel: update 5.2.0 → 5.2.1	2024-04-14 12:07:37 -07:00
py-nilearn
py-obspy	science/py-obspy: Update to 1.4.1	2024-05-06 08:53:04 +00:00
py-oddt
py-openbabel
py-OpenFermion	science/py-OpenFermion: update 1.6.0 → 1.6.1	2024-04-27 00:52:59 -07:00
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC	science/py-OpenMC: update 0.13.3 → 0.14.0	2024-04-06 01:34:42 -07:00
py-openpiv
py-optking	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-paida
py-paramz
py-penaltymodel
py-periodictable	science/py-periodictable: New port: Extensible periodic table of the elements pre-populated with data	2024-05-04 10:16:06 -07:00
py-phono3py
py-phonopy	science/{,py-}phonopy: update 2.23.1 → 2.24.3	2024-06-19 02:56:10 -07:00
py-PubChemPy
py-pupynere	science/py-pupynere: Convert to USE_PYTHON=pep517	2024-05-13 22:06:52 +08:00
py-py3Dmol
py-pyaixi	science/py-pyaixi: Convert to USE_PYTHON=pep517	2024-05-13 22:06:54 +08:00
py-pyberny
py-pycsw	science/py-pycsw: Convert to USE_PYTHON=pep517	2024-05-13 22:06:55 +08:00
py-pydicom
py-PyFR
py-pygeodesy	science/py-pygeodesy: Convert to USE_PYTHON=pep517	2024-05-13 22:06:57 +08:00
py-pygeometa	science/py-pygeometa: Convert to USE_PYTHON=pep517	2024-05-13 22:06:59 +08:00
py-pygmo2
py-pyked
py-pymatgen
py-pymatgen-analysis-alloys
py-pymbd
py-pymol
py-PyNE	science/py-PyNE: Fix build broken by MOAB update	2024-05-05 13:48:56 -07:00
py-pyosf
py-pyprecice
py-pyqubo
py-pysal	science/py-pysal: Convert to USE_PYTHON=pep517	2024-05-13 22:07:01 +08:00
py-pyscf	science/py-pyscf: update 2.5.0 → 2.6.1	2024-06-18 23:58:48 -07:00
py-pyteomics	science/py-pyteomics: Update to 4.7.2	2024-05-20 01:15:51 +08:00
py-qcelemental	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-qcengine	security/libsodium: update to 1.0.19, bump dependent ports	2024-05-20 10:33:03 +00:00
py-qspin
py-quantities
py-rmf	science/{,py-}rmf: update 1.6.0 → 1.6.1	2024-05-24 21:12:09 -07:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize	science/py-scikit-optimize: Convert to USE_PYTHON=pep517	2024-05-13 22:07:02 +08:00
py-scikit-sparse	*/*: chase SuiteSparse’s upgrade	2024-04-29 22:08:56 +02:00
py-scimath
py-scipy	Revert "science/py-scipy: update 1.11.1 → 1.12.0"	2024-05-26 17:22:42 -07:00
py-scoria
py-sdf
py-segregation	science/py-segregation: Remove PY_SETUPTOOLS	2024-04-08 14:46:54 +08:00
py-segyio	science/{,py-}segyio: update 1.9.11 → 1.9.12	2024-04-08 00:31:00 -07:00
py-signac
py-SimpleSpectral
py-sklearn-pandas	science/py-sklearn-pandas: Convert to USE_PYTHON=pep517	2024-05-13 22:07:04 +08:00
py-skrebate	science/py-skrebate: Convert to USE_PYTHON=pep517	2024-05-13 22:07:06 +08:00
py-spaghetti	science/py-spaghetti: Remove PY_SETUPTOOLS	2024-04-08 14:46:56 +08:00
py-spglib	science/{,py-}spglib: update 2.3.1 → 2.4.0	2024-04-11 21:33:44 -07:00
py-tensorflow
py-thewalrus
py-tobler	science/py-tobler: Add LICENSE_FILE	2024-05-16 14:22:09 +08:00
py-trainstation	science/py-trainstation: update 1.0 → 1.1	2024-06-12 08:26:14 -07:00
py-trx-python
py-tweedledum	science/py-tweedledum: update 1.1.1 → 1.1.1-20221123	2024-06-02 21:24:15 -07:00
py-vedo
py-veusz
py-xbout
pybrain
pynn	science/pynn: Update to 0.12.3	2024-05-08 10:27:21 +00:00
q
qbox
qcl
qiskit-aer
qmcpack
qt6-quick3dphysics	science/qt6-quick3dphysics: Fix patch stage	2024-05-26 02:58:25 -04:00
quantum-espresso	science/quantum-espresso: Broken on aarch64	2024-05-12 12:03:50 -07:00
quantum-espresso-pseudopotentials
quantum-jet
qwalk
R-cran-bayesm
R-cran-cmprsk	science/R-cran-cmprsk: Update to 2.2-12	2024-05-21 03:45:17 +00:00
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi	science/R-cran-Epi: Update to 2.51	2024-06-16 22:10:27 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	science/rdkit: Broken on 15 aarch64	2024-05-27 13:56:47 -07:00
rmf	science/{,py-}rmf: update 1.6.0 → 1.6.1	2024-05-24 21:12:09 -07:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4	graphics/proj: Update to 9.4.0	2024-04-15 06:44:23 +02:00
rubygem-rgeo-shapefile	science/rubygem-rgeo-shapefile: Change RUN_DEPENDS from rubygem-dbf to rubygem-dbf4	2024-05-20 01:18:13 +08:00
rubygem-ruby-netcdf
salome-configuration
salome-kernel
scidavis
sciplot
segyio	science/{,py-}segyio: update 1.9.11 → 1.9.12	2024-04-08 00:31:00 -07:00
serac
shelxle	science/shelxle: update 1.0.1648 → 1.0.1650	2024-06-18 23:58:48 -07:00
siconos	*/*: chase SuiteSparse’s upgrade	2024-04-29 22:08:56 +02:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid
simint
simlib
simple-dftd3
simsmith
sirius
smoldyn	graphics/tiff: Update to 4.6.0	2024-04-27 14:44:59 +02:00
sparta
spglib	science/{,py-}spglib: update 2.3.1 → 2.4.0	2024-04-11 21:33:44 -07:00
spheral	science/spheral: update 2024.01.0 → 2024.01.1	2024-04-08 09:57:53 -07:00
step	*/*: Chase math/libqalculate shlib version bump	2024-05-15 16:49:00 -04:00
tblite
teem
tfel
tfel-edf
thermofun	science/thermofun: update 0.4.4 → 0.4.5	2024-04-27 00:52:59 -07:00
tinker	science/tinker: Release was re-rolled yet again	2024-05-19 11:45:05 -07:00
trilinos	*/*: chase SuiteSparse’s upgrade	2024-04-29 22:08:56 +02:00
ttk	science/ttk: Attempt to fix build by adding the searched depency package fast_float	2024-04-08 12:18:41 -07:00
tweedledum
udunits
ukrmol+
v_sim
vipster
vmd
voro++
votca	science/votca: update 2023 → 2024	2024-03-29 09:06:09 -07:00
wannier90
wwplot	science/wwplot: update 0.0.9 → 1.0.0	2024-04-19 12:28:22 -07:00
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb
yoda
zotero	science/zotero: Fix for document indexing	2024-05-16 13:29:22 +02:00
zx
Makefile	science/py-periodictable: New port: Extensible periodic table of the elements pre-populated with data	2024-05-04 10:16:06 -07:00