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freebsd-ports/biology
William Grzybowski 20139c3cfa biology/seqtools: Tools for visualising sequence alignments
Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.

WWW: http://www.sanger.ac.uk/resources/software/seqtools/

PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports opsec.eu>
2013-11-10 11:01:02 +00:00
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ariadne
artemis
avida
babel
biococoa
biojava
blast
blat
boinc-simap
chemeq
clustalw
consed
crux
embassy
emboss
fasta
fasta3 Update to version 36.3.6d 2013-10-29 19:32:15 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview
lagan
lamarc
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3 - Update to 1.8 2013-11-02 19:55:32 +00:00
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml
platon
plink
plinkseq
povchem
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
pymol
python-nexus
rasmol
recombine
ruby-bio
seaview
seqan
seqio
seqtools biology/seqtools: Tools for visualising sequence alignments 2013-11-10 11:01:02 +00:00
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
ugene - Install official UGENE documentation (PDF) 2013-11-01 15:20:28 +00:00
velvet
wise
xmolwt
Makefile biology/seqtools: Tools for visualising sequence alignments 2013-11-10 11:01:02 +00:00