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The Subread package comprises a suite of software programs for processing
next-gen sequencing read data including:
Subread: a general-purpose read aligner
Subjunc: a read aligner developed for aligning RNA-seq reads
featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.
Sublong: a long-read aligner that is designed based on seed-and-vote.
exactSNP: discovers SNPs by testing signals against local background noise.
21 lines
856 B
Plaintext
21 lines
856 B
Plaintext
The Subread package comprises a suite of software programs for processing
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next-gen sequencing read data including:
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Subread: a general-purpose read aligner which can align both genomic
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DNA-seq and RNA-seq reads. It can also be used to discover genomic
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mutations including short indels and structural variants.
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Subjunc: a read aligner developed for aligning RNA-seq reads and for the
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detection of exon-exon junctions. Gene fusion events can be detected as
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well.
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featureCounts: a software program developed for counting reads to genomic
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features such as genes, exons, promoters and genomic bins.
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Sublong: a long-read aligner that is designed based on seed-and-vote.
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exactSNP: a SNP caller that discovers SNPs by testing signals against local
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background noises.
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WWW: http://bioinf.wehi.edu.au/subread-package/
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