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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-22 04:17:44 +00:00
freebsd-ports/science
Yuri Victorovich 27ab04da65 science/lammps: Update 3Mar2020 -> 19Mar2020
Reported by:	GitHub notification
2020-03-20 03:35:55 +00:00
..
2d-rewriter
abinit Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
afni
agrum science/agrum: Update 0.16.4 -> 0.17.1 2020-03-18 00:09:11 +00:00
aircraft-datcom audio/festvox-cmu_us_slt_arctic, games/flightgear-terragear, graphics/zathura-cb, graphics/zathura-pdf-poppler, graphics/zathura-ps, math/nfft, net/py-mpi4py, science/aircraft-datcom, x11-themes/gnome-icons-luv: reset MAINTAINER 2020-03-02 17:35:42 +00:00
ALPSCore
antioch
apbs
atom Mark a few ports broken (unfetchable) 2020-01-05 10:26:04 +00:00
atompaw atompaw is actually fetchable 2020-01-05 11:52:46 +00:00
avogadro2 science/avogadro2: Update 1.91.0 -> 1.93.0 2020-02-06 07:09:42 +00:00
avogadrolibs science/avogadrolibs: Update 1.92.1 -> 1.93.0 2020-02-06 05:09:44 +00:00
bagel
bddsolve
berkeleygw Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
bodr
brian Deprecate some ports using deprecated version of python 2020-03-08 17:01:46 +00:00
buddy
cdcl
cdf
cdk New port: science/cdk: Chemistry Development Kit 2020-01-09 16:48:21 +00:00
cdo
cgnslib Upgrade to v4.1.1. 2020-03-17 11:01:17 +00:00
cgribex
checkmol - Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems 2020-03-06 06:26:05 +00:00
chemical-mime-data
chemps2 Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
chemtool
chemtool-devel
chrono Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
clhep
clipper
code_saturne Remove the test about openmp. 2020-03-17 11:01:56 +00:00
colt
coordgenlibs science/coordgenlibs: Update 1.3.2 -> 1.4.0 2020-03-17 07:32:33 +00:00
cp2k
cp2k-data
crf++
dalton Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
datawarrior Deprecate java/openjfx8-devel consumers 2020-03-19 09:33:13 +00:00
dcl
devisor
dftbplus Deprecate a few ports 2020-02-23 15:25:53 +00:00
dkh
dlib-cpp science/dlib-cpp and science/py-dlib: Update to 19.19. 2020-02-12 17:28:11 +00:00
dlpoly-classic
drawxtl
dvc Deprecate a few ports 2020-02-23 15:25:53 +00:00
eccodes Update to 2.16.0 2020-01-25 18:24:28 +00:00
elk
elmerfem science/elmerfem: Add the GUI option 2020-03-10 16:52:41 +00:00
epte
erd
erkale Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
erkale-pseudopotentials
esys-particle Mark science/esys-particle as BROKEN (not just on 13) 2019-12-30 14:15:34 +00:00
fastcap
fasthenry
fisicalab Return theraven's ports to the pool after safekeeping his commit bit. 2020-03-05 20:49:05 +00:00
fleur Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
fsom
fvcom
fvcom-mpi
gabedit Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
gamess-us Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
gchemutils Remove textproc/gnome-doc-utils. 2020-01-27 19:40:17 +00:00
gdma
getdp
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps
grib_api
gromacs Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
hdf
hdf5 Update to 1.10.6 2019-12-30 16:57:12 +00:00
hdf5-18
healpix
highfive
hypre Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
iboview Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
InsightToolkit - Update devel/gdcm to 3.0.5. 2020-02-22 23:28:41 +00:00
isaac-cfd
jdftx
jmol science/jmol: Update 14.30.1 -> 14.30.2 and unbreak 2020-02-01 03:32:16 +00:00
jstrack
kalzium KDE Applications: update to 19.12.3 2020-03-06 22:11:55 +00:00
kim-api
kst2
lammps science/lammps: Update 3Mar2020 -> 19Mar2020 2020-03-20 03:35:55 +00:00
lamprop
latte Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
libaec
libccp4
libcint Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
libctl
libefp
libgeodecomp
libghemical
libgridxc
libint
libint2 science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0 2020-01-13 02:54:47 +00:00
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
lm Bump PORTREVISION for devel/protobuf shlib change 2020-01-22 05:53:20 +00:00
luscus
madness
maeparser science/maeparser: Update 1.2.2 -> 1.2.3 2020-03-17 07:19:57 +00:00
massxpert
mbdyn science/mbdyn: use math/metis instead of expired math/metis4 for METIS option 2020-02-22 18:53:40 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2 science/mmdb2: Update 2.0.19 -> 2.0.20 2020-01-13 03:30:45 +00:00
mmtf-cpp
mol2ps - Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems 2020-03-06 06:26:05 +00:00
molgif
molscript
molsketch
mpb
mpqc Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
msms
multiwfn Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
namd
ncnn science/ncnn: Update 20200106 -> 20200226 2020-02-29 05:22:00 +00:00
nest Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem
nwchem-data
octopus
openbabel
openkim
openkim-models
openmx Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
opensim-core science/opensim-core: Update 4.0-601 -> 4.1 2020-02-04 07:01:58 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2
paje
paraview Deprecate some ports using deprecated version of python 2020-03-08 17:01:46 +00:00
pcmsolver
PETSc Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
pnetcdf
pulseview
py-abipy Mark BROKEN: missing build depends 2020-01-18 22:22:27 +00:00
py-asdf Update to 2.5.2 2020-03-01 06:48:55 +00:00
py-ase
py-avogadrolibs science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0 2020-02-06 07:17:20 +00:00
py-cdo
py-chainer science/py-chainer: Update 7.1.0 -> 7.2.0 2020-02-15 03:59:09 +00:00
py-chainer-chemistry
py-chempy science/py-chempy: Update 0.7.9 -> 0.7.10 2020-03-07 20:47:22 +00:00
py-coards
py-DendroPy
py-dlib science/dlib-cpp and science/py-dlib: Update to 19.19. 2020-02-12 17:28:11 +00:00
py-eccodes-python Update to 0.9.5 2020-01-17 16:40:13 +00:00
py-geolinks Add py-geolinks 0.2.0 2020-01-18 18:23:32 +00:00
py-geomet Add py-geomet 0.2.1 2019-12-29 12:46:17 +00:00
py-geometer Update to 0.2.2 2020-02-17 19:43:41 +00:00
py-gpaw Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
py-GPy Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
py-GPyOpt Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-gsd science/py-gsd: Update 1.9.3 -> 1.10.0 2020-01-03 03:58:46 +00:00
py-h5json New port: science/py-h5json: Tools and library for representing HDF5 in JSON 2020-01-26 10:07:36 +00:00
py-h5py
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-mmtf-python
py-molmod
py-netCDF4
py-obspy - Update to 1.2.1 2020-03-12 03:58:15 +00:00
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pycsw Add py-pycsw 2.4.2 2020-01-18 18:23:39 +00:00
py-pydicom
py-PyFR Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
py-pygeodesy
py-pygeometa Add py-pygeometa 0.5.0 2020-01-18 18:23:44 +00:00
py-pymatgen science/py-pymatgen: fix build on GCC architectures 2020-01-23 10:44:41 +00:00
py-pymol Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-pyosf
py-PyQuante Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-pysal
py-pyteomics Update to 4.2 2020-03-01 06:49:00 +00:00
py-qcelemental science/py-qcelemental: Update 0.11.0 -> 0.12.0 2020-01-12 21:07:37 +00:00
py-qcengine
py-qspin
py-quantities science/py-quantities: Update 0.12.3 -> 0.12.4 2020-01-12 07:24:33 +00:00
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-scikit-learn Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
py-scikit-sparse
py-scimath
py-scipy Revert r524969 and unbreak bulk -a 2020-02-02 16:40:43 +00:00
py-scoria science/py-scoria: Update 1.0.3 -> 1.0.4 2020-02-29 05:15:13 +00:00
py-SimpleSpectral
py-spglib
py-tensorflow devel/icu: update to 66.1 2020-03-13 09:47:16 +00:00
py-tensorflow-estimator
py-veusz science/py-veusz: Update 3.1 -> 3.2 2020-03-11 06:11:21 +00:00
py-ws2300 Deprecate a few ports 2020-02-23 15:25:53 +00:00
pybrain
pynn - Update to 0.9.5 2020-02-22 15:05:40 +00:00
qbox science/qbox: Update 1.68.1 -> 1.68.2 2020-02-05 03:00:02 +00:00
qcl
qiskit-aer science/qiskit-aer: Broken on i386 due to undefined reference to `__atomic_load' 2020-03-15 17:43:20 +00:00
qmcpack Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
quantum-espresso science/quantum-espresso: Update 6.4.1 -> 6.5 2019-12-31 19:32:59 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm - Update to 1.0.5.1 2020-01-30 16:35:33 +00:00
R-cran-FAdist Adding R-cran-FAdist, a R package with a collection of probability distributions 2020-01-28 18:13:38 +00:00
R-cran-fastICA Return dbn's ports to the pool after safekeeping his commit bit. 2020-02-03 20:21:08 +00:00
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit graphics/py-pillow: Update to 7.0.0 2020-02-24 11:36:15 +00:00
rmf Fix build with hdf5 1.10.6 2020-01-01 16:31:57 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
simgrid
simint
simlib
simsmith
smoldyn
sparta science/sparta: Update 8Jan2020 -> 24Jan2020 2020-01-24 17:06:22 +00:00
spglib
step KDE Applications: update to 19.12.3 2020-03-06 22:11:55 +00:00
svmlight
szip
teem
tfel
tinker
udunits
v_sim
vipster science/vipster: Limit the version format to prevent portscout reporting odd revisions 2020-01-12 20:12:43 +00:00
vmd Return dbn's ports to the pool after safekeeping his commit bit. 2020-02-03 20:21:08 +00:00
voro++
wannier90 science/wannier90: Update 3.0.0 -> 3.1.0 2020-03-08 02:34:49 +00:00
wwplot science/wwplot: Update 0.0.7 -> 0.0.8 2020-01-25 17:53:30 +00:00
wxmacmolplt
xcrysden
xdrawchem
xfce4-equake-plugin
yoda science/yoda: Update 1.7.7 -> 1.8.0 2020-01-19 09:06:26 +00:00
Makefile New port: science/qiskit-aer: Simulator for quantum circuits, including noise models 2020-03-12 01:05:55 +00:00