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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-22 04:17:44 +00:00
freebsd-ports/science
Jason E. Hale 121bfe4c66 Update math/libqalculate and math/qalculate to 2.6.1
Chase libqalculate shared library version bump
2018-07-27 10:14:39 +00:00
..
2d-rewriter
abinit science/abinit: Update 8.8.2 -> 8.8.3 2018-06-21 05:43:38 +00:00
afni Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
aircraft-datcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ALPSCore devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
antioch Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
atompaw science/atompaw: Update 4.0.0.14 -> 4.1.0.3 2018-07-09 00:31:17 +00:00
avogadro Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
bddsolve devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bft
bodr
brian Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
buddy
cdcl
cdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cdo Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
cgnslib - Add missing depend on libX11 2018-03-22 08:33:19 +00:00
cgribex
checkmol - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
chemical-mime-data
chemps2 science/chemps2: Update 1.8.6 -> 1.8.7 2018-03-26 09:47:56 +00:00
chemtool science/chemtool: Update 1.6.11 -> 1.6.14 2018-03-24 01:06:20 +00:00
chemtool-devel Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
clhep science/clhep: Update version 2.3.1.1=>2.4.0.4 2018-04-24 20:51:38 +00:00
clipper New port: science/clipper: Libraries for the organisation of crystallographic data 2018-07-08 01:27:10 +00:00
colt Mark as broken on powerpc64. 2018-06-08 02:35:17 +00:00
coot New port: science/coot: Crystallographic Object-Oriented Toolkit 2018-07-08 04:45:25 +00:00
crf++
dcl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
devisor
dft_tools New port: science/dft_tools: Interface to DFT codes in TRIQS 2018-06-17 02:42:52 +00:00
dkh Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
dlib-cpp Upgrade science/dlib-cpp and science/py-dlib to 19.13. 2018-05-28 11:34:44 +00:00
dlpoly-classic Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
eccodes Clean up Makefile 2018-06-28 21:26:47 +00:00
ecs Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
epte
erd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fastcap
fasthenry
fisicalab Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
fsom fsom: Tiny C library for managing SOM (Self-Organizing Maps) neural networks 2018-04-16 18:15:30 +00:00
fvcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvcom-mpi Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvm - Update WWW 2018-03-31 09:33:26 +00:00
gchemutils science/gchemutils: mark BROKEN if XUL option is chosen 2018-06-23 10:41:05 +00:00
gdma Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
getdp Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
ghemical science/ghemical: Remove DEPRECATED/EXPIRATION_DATE labels 2018-07-18 05:31:21 +00:00
ghmm
gnudatalanguage Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
gramps science/gramps: Tidy up the USE_PYTHON settings 2018-02-26 15:06:56 +00:00
grib_api Update to 1.26.1 2018-05-17 18:29:50 +00:00
gromacs science/gromacs: Chase the changed tarball 2018-06-16 21:07:10 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils science/h5utils: Update to 1.13.1 2018-03-22 04:45:38 +00:00
harminv Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
hdf - Switch to new test framework 2018-04-29 08:33:52 +00:00
hdf5 Fix MASTER_SITES 2018-06-27 20:11:59 +00:00
hdf5-18 Fix plist whith FORTRAN option. 2018-05-07 19:21:09 +00:00
hypre Mark broken on powerpc64. 2018-06-08 02:39:46 +00:00
iboview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
InsightToolkit Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
isaac-cfd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
jstrack
kalzium Update KDE Applications to 18.04.3 2018-07-13 17:41:56 +00:00
kalzium-kde4 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
kst2 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
lamprop science/lamprop: Unbreak by fixing the python interpreter in the shebang 2018-03-13 08:27:23 +00:00
libaec Convert to USE_GITLAB 2018-03-14 18:11:33 +00:00
libccp4 New port: science/libccp4: Protein X-ray crystallography toolkit 2018-07-08 00:24:55 +00:00
libcint science/libcint: Update 3.0.12 -> 3.0.13 2018-06-15 08:48:31 +00:00
libctl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libefp
libgeodecomp Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
libghemical science/libghemical: Fix C++11 errors on 12 2018-07-26 08:11:33 +00:00
libint Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libkml Convert PORTEXAMPLES=* to PLIST entries 2018-05-19 11:06:20 +00:00
liblinear Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
liboglappth Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
libquantum
libssm science/libssm: Fix build: put spaces between quotedstrings and defined values in C 2018-07-13 04:58:15 +00:00
libsvm Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
libsvm-python
libxc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
linsmith Make libgnome and libgnomeui not implying esound dependency 2018-03-26 12:38:56 +00:00
massxpert Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
mbdyn science/mbdyn: Take maintainership. 2018-06-22 08:08:30 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps science/mcxtrace-comps: remove comment line 2018-05-07 19:43:04 +00:00
medit
meep Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
mei - Switch to new test framework 2018-04-26 08:33:48 +00:00
metaf2xml
metaphysicl New port: science/metaphysicl: Metaprogramming, operator-overloaded classes for numerical simulations 2018-04-18 04:59:15 +00:00
minc2
mmdb2 science/mmdb2: Update 2.0.12 -> 2.0.16 2018-07-07 23:40:51 +00:00
mol2ps - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
MOOSE-neural-simulator Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
mpb Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpqc science/mpqc: Fix build 2018-07-24 20:22:15 +00:00
mpqc-mpich Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ncs science/ncs: Unbreak 2018-03-13 09:50:42 +00:00
netcdf Fix packaging when DAP option is disabled 2018-04-14 23:59:26 +00:00
netcdf-cxx
netcdf-fortran Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
nifticlib
openbabel science/openbabel: Take maintainership; Add the GUI option using wxWidgets-3.0 2018-06-12 07:39:34 +00:00
openkim - Switch to new test framework 2018-04-23 08:33:47 +00:00
openstructure science/openstructure: Add USE_CXXSTD=c++98; Use MASTER_SITES instead of USE_GITLAB 2018-07-13 09:24:52 +00:00
p5-Algorithm-SVMLight Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-3DBuilder Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Bond-Find Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Canonicalize Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Elements Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-MDLMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-Mopac Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-PDB Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SLN Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMARTS Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMILES Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-VRML Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-XYZ Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-FormulaPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-InternalCoords Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Isotope Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MacroMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MidasPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mok Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mol - Add LICENSE 2018-06-26 09:07:15 +00:00
p5-Chemistry-Pattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Reaction Add LICENSE 2018-06-05 18:57:18 +00:00
p5-Chemistry-Ring Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-BUFR Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter-iArea Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-ReadGRIB Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-WebService-Elevation-USGS Update WWW 2018-05-27 20:15:16 +00:00
p5-Mcstas-Tools Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
p5-PerlMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Physics-Unit Update WWW 2018-05-27 20:15:16 +00:00
paje
paraview science/paraview: Add patch to fix build with upcomeing cmake-3.12 2018-07-20 21:23:16 +00:00
pcmsolver Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
PETSc science/PETSc: Update 3.9.2 -> 3.9.3 2018-07-04 20:25:29 +00:00
pnetcdf Add OPENMPI3 option 2018-05-20 18:56:03 +00:00
psychopy science/psychopy: Update 1.90.2 -> 1.90.3 2018-07-22 03:22:52 +00:00
pulseview science/pulseview: unbreak with boost 1.68 on FreeBSD 10.* 2018-07-12 23:21:47 +00:00
py-abipy science/py-abipy: Change FLAVOR -> PY_FLAVOR 2018-06-19 01:18:08 +00:00
py-cdo Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-coards Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-DendroPy
py-dlib Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
py-gsd New port: science/py-gsd: GSD (General Simulation Data) file format for Python 2018-05-13 20:32:41 +00:00
py-h5py Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-hcluster Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-kinematics Add py-kinematics 0.0.7 2018-06-24 20:05:42 +00:00
py-MDAnalysis Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-MDAnalysisTests Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mdp Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mlpy Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
py-mmtf-python Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-netCDF4 science/py-netCDF4: Add USE_PYTHON=concurrent 2018-06-19 00:03:37 +00:00
py-obspy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-OpenFermion science/py-OpenFermion: Update 0.7 -> 0.8 2018-07-17 17:41:26 +00:00
py-openpiv Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-paida Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pupynere Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyaixi Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pydicom - Update to 1.1.0 2018-06-22 03:06:51 +00:00
py-pymatgen Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pymol Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyosf Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-PyQuante Mark as broken on aarch64. 2018-06-25 04:54:53 +00:00
py-pysal Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics.biolccc Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-qspin Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-quantities science/py-quantities: Update 0.12.1 -> 0.12.2 2018-07-04 19:21:46 +00:00
py-rmf New port: science/py-rmf: Library to support reading and writing of Rich Molecular Format files 2018-07-01 05:22:27 +00:00
py-ScientificPython science/py-ScientificPython: Change WWW URL; Change to CHEESESHOP 2018-06-30 16:49:08 +00:00
py-scikit-fuzzy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-learn Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-sparse Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scimath Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scipy - Update to 1.1.0 2018-05-24 12:23:27 +00:00
py-scoria Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-SimpleSpectral New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00
py-spglib science/py-spglib: Fix typo in COMMENT 2018-06-19 02:20:42 +00:00
py-tensorflow Correction to r473019: Revert the unintended change to the 'Created by' headers. 2018-06-22 08:28:00 +00:00
py-veusz Remove all := from BUILD_DEPENDS, here are never needed. 2018-07-09 08:40:17 +00:00
py-ws2300 science/py-ws2300: Unbroke the port. 2018-02-26 04:16:14 +00:00
pybrain Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pycdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pynn Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
qcl
qtresistors Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
quantum-espresso science/quantum-espresso: Add pseudo potential files because they are used in all calculations 2018-07-19 10:18:07 +00:00
R-cran-AMORE Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-bayesm Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-cmprsk Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-DCluster Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-e1071 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-eco Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-Epi - Update to 2.30 2018-05-17 06:30:11 +00:00
R-cran-epicalc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-etm - Update to 0.6-2.1 2018-06-20 03:34:55 +00:00
R-cran-fastICA Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-kernlab - Update to 0.9-26 2018-05-09 00:53:54 +00:00
R-cran-snow Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-som Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-udunits2 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
rdkit science/rdkit: Update 2018_03_2 -> 2018_03_3 2018-07-20 06:28:32 +00:00
rmf New port: science/rmf: Library to support reading and writing of Rich Molecular Format files 2018-06-29 09:04:22 +00:00
rubygem-ai4r
rubygem-cdo Update to 1.3.6 2018-04-04 18:53:54 +00:00
rubygem-rgeo Add rubygem-rgeo 1.0.0 2018-04-07 16:32:18 +00:00
rubygem-rgeo-geojson Add rubygem-rgeo-geojson 2.0.0 2018-04-07 16:32:45 +00:00
rubygem-rgeo-proj4 Add rubygem-rgeo-proj4 1.0.0 2018-04-07 16:33:14 +00:00
rubygem-rgeo-shapefile Add rubygem-rgeo-shapefile 1.0.0 2018-04-07 16:33:40 +00:00
rubygem-ruby-dcl science/rubygem-ruby-dcl: update to 1.8.1 2018-07-10 15:12:47 +00:00
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
simlib science/simlib: Fix build 2018-07-07 21:09:10 +00:00
simsmith
spglib New port: science/spglib: C library for finding and handling crystal symmetries 2018-06-15 17:42:24 +00:00
step Update math/libqalculate and math/qalculate to 2.6.1 2018-07-27 10:14:39 +00:00
step-kde4 Update math/libqalculate and math/qalculate to 2.6.1 2018-07-27 10:14:39 +00:00
svmlight
szip Auto-accept SZIP license, otherwise hundreds of ports are skipped 2018-06-06 12:13:19 +00:00
tfel Adjust USES to fix builds on gcc-based architectures. 2018-06-18 19:03:03 +00:00
triqs science/triqs: Broken on i386 2018-06-21 05:57:43 +00:00
udunits
v_sim Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
vmd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
voro++
xcrysden science/xcrysden: Add missing runtime dependencies 2018-07-27 08:50:41 +00:00
xfce4-equake-plugin
xmakemol
Makefile New port: science/xcrysden: Crystalline and molecular structure visualisation program 2018-07-19 19:19:38 +00:00