| .. |
|
adun
|
|
|
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
- convert USE_CMAKE to USES
|
2013-03-22 20:06:14 +00:00 |
|
babel
|
- Mark conflict with science/openbabel
|
2012-12-11 14:24:51 +00:00 |
|
biococoa
|
|
|
|
biojava
|
Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP
|
2012-12-11 07:26:38 +00:00 |
|
blast
|
|
|
|
blat
|
|
|
|
boinc-simap
|
Remove compatibility with FreeBSD 7.X
|
2013-03-06 23:31:58 +00:00 |
|
chemeq
|
Convert USE_BISON to USES= bison
|
2013-03-08 11:32:11 +00:00 |
|
clustalw
|
|
|
|
consed
|
|
|
|
crux
|
- adoption of optionsNG
|
2013-03-18 06:48:55 +00:00 |
|
dotter
|
- Mark broken checksum mismatch
|
2013-03-25 01:41:31 +00:00 |
|
embassy
|
- adopt optionsNG
|
2013-03-18 23:35:01 +00:00 |
|
emboss
|
|
|
|
fasta
|
|
|
|
fasta3
|
|
|
|
fastdnaml
|
|
|
|
finchtv
|
|
|
|
fluctuate
|
|
|
|
garlic
|
|
|
|
genpak
|
|
|
|
gff2ps
|
|
|
|
gmap
|
|
|
|
gperiodic
|
- Convert USE_GETTEXT to USES (part 3)
|
2013-04-24 18:10:30 +00:00 |
|
grappa
|
|
|
|
hmmer
|
|
|
|
iolib
|
|
|
|
jalview
|
|
|
|
lagan
|
|
|
|
lamarc
|
|
|
|
libgenome
|
|
|
|
libsbml
|
- adoption of optionsNG
|
2013-03-18 06:50:12 +00:00 |
|
linux-foldingathome
|
|
|
|
mafft
|
|
|
|
mapm3
|
|
|
|
migrate
|
|
|
|
molden
|
Update to 5.0.4
|
2012-12-14 17:47:16 +00:00 |
|
mopac
|
|
|
|
mrbayes
|
|
|
|
mummer
|
|
|
|
muscle
|
|
|
|
ncbi-toolkit
|
- Update to 2012.06.20
|
2013-03-14 05:27:58 +00:00 |
|
njplot
|
|
|
|
ortep3
|
|
|
|
p5-AcePerl
|
|
|
|
p5-Bio-ASN1-EntrezGene
|
|
|
|
p5-Bio-Das
|
Cleanup supporting perl version 5.8 and 5.10,
|
2012-12-17 15:39:36 +00:00 |
|
p5-Bio-Das-Lite
|
|
|
|
p5-Bio-GFF3
|
- Update to 1.5
|
2012-12-16 04:22:15 +00:00 |
|
p5-Bio-Glite
|
For perl@ owned ports:
|
2013-03-29 00:44:53 +00:00 |
|
p5-Bio-Graphics
|
Add missing item to pkg-plist reported by QAT but not reported by poudriere.
|
2013-03-03 15:22:43 +00:00 |
|
p5-Bio-MAGETAB
|
For perl@ owned ports:
|
2013-03-29 00:44:53 +00:00 |
|
p5-Bio-NEXUS
|
For perl@ owned ports:
|
2013-03-29 00:44:53 +00:00 |
|
p5-Bio-Phylo
|
- Update to 0.52 [1]
|
2013-02-16 14:58:51 +00:00 |
|
p5-Bio-SCF
|
|
|
|
p5-bioperl
|
|
|
|
p5-bioperl-run
|
|
|
|
paml
|
|
|
|
phd2fasta
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
|
|
|
phyml
|
- Update to 20121109.
|
2013-02-04 10:07:30 +00:00 |
|
platon
|
|
|
|
plink
|
|
|
|
plinkseq
|
Fix build with protobuf-2.5.0
|
2013-03-21 14:09:22 +00:00 |
|
povchem
|
- remove empty files
|
2013-02-15 08:57:19 +00:00 |
|
primer3
|
|
|
|
protomol
|
- adoption of optionsNG
|
2013-03-18 06:54:39 +00:00 |
|
psi88
|
|
|
|
py-biopython
|
|
|
|
pycogent
|
|
|
|
pyfasta
|
|
|
|
pymol
|
|
|
|
python-nexus
|
|
|
|
rasmol
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
- adoption of optionsNG
|
2013-03-18 06:55:42 +00:00 |
|
seaview
|
- Update to 4.4.1
|
2013-03-26 01:08:40 +00:00 |
|
seqan
|
- convert USE_CMAKE to USES
|
2013-03-22 20:06:14 +00:00 |
|
seqio
|
|
|
|
sim4
|
|
|
|
ssaha
|
|
|
|
t_coffee
|
- Update to 9.03.
|
2013-01-14 08:04:38 +00:00 |
|
tinker
|
- Update to 6.2.01
|
2013-03-24 16:13:57 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
|
|
|
tRNAscan-SE
|
|
|
|
ugene
|
Unbreak on 7.X and i386 systems.
|
2013-02-25 13:00:15 +00:00 |
|
velvet
|
|
|
|
wise
|
- Update to 2.4.1
|
2013-03-02 14:50:25 +00:00 |
|
xdrawchem
|
- Strip header at request of original creator
|
2013-01-27 05:55:20 +00:00 |
|
xmolwt
|
Finish converting the whole ports tree to USES=pkgconfig
|
2013-04-23 14:20:25 +00:00 |
|
Makefile
|
Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.
|
2013-02-23 04:50:48 +00:00 |
