Gerald Pfeifer 2291db64ec Fix the build with more standards-compliant compilers such as GCC 4.7. [1] ... On the way replace USE_GMAKE by USES=gmake. PR: 184566 [1], 182136 Submitted by: Christoph Moench-Tegeder <cmt@burggraben.net> [1] Approved by: maintainer (Jason Bacon <jwbacon@tds.net>) [1]		2013-12-13 09:34:40 +00:00
..
ariadne	Stage support	2013-11-12 21:54:36 +00:00
artemis
avida	- Fix build with clang	2013-11-27 16:07:51 +00:00
babel
biococoa
biojava
blast
blat	Add stage support	2013-11-12 22:02:02 +00:00
boinc-simap
chemeq
clustalw
consed
crux	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
embassy	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
emboss	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
fasta
fasta3	Update to version 36.3.6d	2013-10-29 19:32:15 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak	Respect PORT_OPTIONS:MDOCS	2013-12-09 01:28:41 +00:00
gff2ps
gmap	Support stage	2013-12-10 17:21:46 +00:00
gperiodic	- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [bce])	2013-10-22 13:57:35 +00:00
grappa	Support stage	2013-12-10 17:25:38 +00:00
hmmer
iolib	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
jalview
lagan	- Fix build	2013-11-27 13:16:47 +00:00
lamarc	biology/lamarc: fix build on current	2013-11-26 15:37:05 +00:00
libgenome
libsbml	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
linux-foldingathome
mafft
mapm3
migrate
molden	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
mopac	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
mrbayes	Support stage	2013-12-10 17:54:12 +00:00
mummer
muscle
ncbi-toolkit
njplot
ortep3	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.8	2013-11-02 19:55:32 +00:00
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB	- Update to 1.28	2013-11-28 15:05:08 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml
platon	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
plink	Fix the build with more standards-compliant compilers such as GCC 4.7. [1]	2013-12-13 09:34:40 +00:00
plinkseq	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
povchem	Convert to USES=dos2unix	2013-11-18 13:45:44 +00:00
primer3
protomol	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
psi88	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
py-biopython	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pycogent	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pyfasta	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pymol	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
python-nexus
rasmol
recombine
ruby-bio
seaview	In preparation for making libtool generate libraries with a sane name, fix all	2013-12-11 14:43:51 +00:00
seqan	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
seqio
seqtools	biology/seqtools: update to 4.23	2013-11-14 20:09:00 +00:00
sim4
ssaha
t_coffee	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
tinker	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene	- Install official UGENE documentation (PDF)	2013-11-01 15:20:28 +00:00
velvet
wise
xmolwt
Makefile	biology/seqtools: Tools for visualising sequence alignments	2013-11-10 11:01:02 +00:00