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freebsd-ports/science
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David Chisnall 9156bf1b9e Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 
Some ports were already installing in the System domain, for these just remove the Makefile lines explicitly specifying the install domain.

The rest are installed in the Local domain, remove any overrides, update their pkg-plists and any explicit paths in the Makefiles and then bump port revision.

Approved by:	bapt (mentor)
Differential Revision:	https://reviews.freebsd.org/D2977
2015-09-19 10:33:34 +00:00
..
2d-rewriter - Change host to Github 2015-09-11 07:11:23 +00:00
afni Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
avogadro Add patch to fix the build with CMake 3.2. 2015-06-15 21:49:52 +00:00
bddsolve science/bddsolve: Set environment, use CXXFLAGS, cleanup 2015-02-25 12:01:52 +00:00
bft
bodr
brian
buddy Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
cdcl
cdf Follow-up commit to r396576 since I've forgotten to fix some things: 2015-09-10 16:31:33 +00:00
cdo - Convert to new options dependency helper 2015-08-19 01:38:20 +00:00
cgnslib - Update to 1.8.15 2015-05-24 08:10:28 +00:00
cgribex - Use INSTALL_TARGET=install-strip instead of STRIP_CMD 2015-01-19 19:51:01 +00:00
checkmol - editors/lazarus update to 1.4.2 2015-08-09 08:06:43 +00:00
chemical-mime-data - Fix leftover files generated by shared-mime-info 2015-08-14 13:37:02 +00:00
chemtool
chemtool-devel
clhep science/clhep: Update version 2.2.0.6=>2.2.0.8 2015-06-17 08:34:24 +00:00
colt
crf++ MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
dcl
devisor
dlpoly-classic - Update to 1.10.0 2015-09-17 02:58:01 +00:00
ecs - Update to 1.8.15 2015-05-24 08:10:28 +00:00
epte
fastcap
fasthenry
fisicalab Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
fvcom
fvcom-mpi - Update to 1.10.0 2015-09-17 02:58:01 +00:00
fvm - Update to 1.8.15 2015-05-24 08:10:28 +00:00
gchemutils MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
getdp
ghemical Part 1 of adding USE_GNOME=intltool to ports that require it. 2015-08-02 20:23:55 +00:00
ghmm - Update to 0.9.r3 2015-09-18 06:16:31 +00:00
gnudatalanguage Remove ansi version fo wxGTK 2.8 and only keep the unicode version 2015-09-16 19:51:26 +00:00
gramps Part 1 of adding USE_GNOME=intltool to ports that require it. 2015-08-02 20:23:55 +00:00
grib_api - Update to 1.13.1 2015-06-15 14:42:53 +00:00
gromacs - Update to 5.0.6 2015-08-16 21:31:41 +00:00
gsmc Reassign to hamradio@ 2015-08-18 20:37:35 +00:00
gtamsanalyzer Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
gwyddion - Update to 2.41 2015-06-30 20:25:55 +00:00
h5utils - Update to 1.8.15 2015-05-24 08:10:28 +00:00
harminv - Switch to guile2 2015-03-10 20:45:19 +00:00
hdf Reformat port description text and split it into three paragraphs to improve 2015-09-10 17:11:12 +00:00
hdf5 - Use DISTVERSIONSUFFIX instead of DISTNAME 2015-06-13 11:11:52 +00:00
hdf-java Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.10.2 2015-08-20 23:02:14 +00:00
InsightToolkit science/InsightToolkit: update 4.7.2 -> 4.8.0 2015-09-08 09:45:50 +00:00
isaac-cfd
jmol
jstrack - Add empty directory to plist, sort plist 2015-09-09 14:53:30 +00:00
kalzium Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
kst2 Convert my ports to new options helpers 2015-08-25 10:03:08 +00:00
lamprop
libctl science/libctl: update to 3.2.2 2015-01-04 12:56:56 +00:00
libghemical
libint
libkml - Cleanup GH_* knobs: 2015-05-13 18:59:21 +00:00
liblinear Cleanup DIST* variables. 2015-05-11 18:34:57 +00:00
liboglappth
libquantum
libsvm Cleanup DIST* variables. 2015-05-11 18:34:57 +00:00
libsvm-python Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
linsmith
massxpert Drop USES=iconv. 2015-09-11 09:43:07 +00:00
mbdyn - Use blaslapack 2015-02-05 22:51:22 +00:00
mcstas science/mcstas: USE_BISON is not used 2015-01-05 18:23:27 +00:00
mcstas-comps New port: science/mcstas-comps 2015-01-05 09:38:16 +00:00
medit cleanup plist 2014-12-20 19:35:10 +00:00
meep Fix build. Options helpers cannot be used here. 2015-08-03 17:55:15 +00:00
mei
metaf2xml science/metaf2xml update 1.56 -> 1.57 2015-07-14 21:00:53 +00:00
minc2 - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mol2ps - editors/lazarus update to 1.4.2 2015-08-09 08:06:43 +00:00
mpb - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mpqc - Fix shebangs 2015-06-11 09:27:05 +00:00
mpqc-mpich
ncs Upgrade ncs to 2.0.8 with its dependencies. 2015-05-14 17:31:29 +00:00
netcdf - Convert to new options dependency and target helper 2015-08-20 04:30:14 +00:00
netcdf-cxx - Cleanup GH_* knobs: use DISTVERSIONPREFIX 2015-05-13 18:59:26 +00:00
netcdf-fortran - Cleanup GH_* knobs: 2015-05-13 18:59:31 +00:00
nifticlib
openbabel Convert my ports to new options helpers 2015-08-25 10:03:08 +00:00
openkim
orthanc Update to upstream version 0.9.3 2015-08-16 10:15:50 +00:00
orthanc-postgresql - Update to 1.2 2015-08-17 09:17:23 +00:00
orthanc-webviewer - Update to 1.2 2015-08-17 09:17:56 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES - Fix shebangs 2015-05-28 18:15:01 +00:00
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Geo-Coordinates-Converter MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS - Update to 0.102 2015-07-01 17:46:12 +00:00
p5-PerlMol
p5-Physics-Unit Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
paje Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
paraview Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
pnetcdf - Update to 1.10.0 2015-09-17 02:58:01 +00:00
psychopy Remove ansi version fo wxGTK 2.8 and only keep the unicode version 2015-09-16 19:51:26 +00:00
pulseview - Bump PORTREVISION after libzip update 2015-08-28 10:48:41 +00:00
py-cdo - Allow concurrent installation (USE_PYTHON=concurrent) 2015-09-02 17:04:36 +00:00
py-coards
py-DendroPy - Don't cat pkg-message from Makefiles 2015-05-27 00:15:04 +00:00
py-h5py - Update to 1.8.15 2015-05-24 08:10:28 +00:00
py-hcluster - Add LICENSE 2015-09-14 12:20:09 +00:00
py-mdp Remove UNIQUENAME and LATEST_LINK. 2015-08-17 14:20:40 +00:00
py-mlpy Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
py-netCDF4 - Update to 1.8.15 2015-05-24 08:10:28 +00:00
py-obspy - Update to 0.10.2 2015-09-13 07:02:47 +00:00
py-paida
py-pupynere
py-pyaixi
py-pydap - Mark BROKEN: does not build: 2015-08-10 20:00:30 +00:00
py-pydicom - Fix shebangs 2015-06-05 21:10:18 +00:00
py-pysal
py-scikit-learn MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
py-scikit-sparse - Fix build when using python 3.x 2015-07-26 15:11:39 +00:00
py-scimath - Unbreak 2015-03-14 15:07:54 +00:00
py-scipy - Cleanup Makefile 2015-04-04 19:37:30 +00:00
py-ws2300 - Add missing files to plist 2015-06-05 21:10:48 +00:00
pybrain Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
pycdf - Strip library 2015-06-03 16:51:58 +00:00
pynn
pyteomics
pyteomics.biolccc
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster - Update to 0.2-7 2015-06-13 05:45:48 +00:00
R-cran-e1071 - Update to 1.6-7 2015-08-08 07:13:44 +00:00
R-cran-eco
R-cran-Epi - Update to 1.1.67 2015-06-13 06:04:57 +00:00
R-cran-epicalc
R-cran-snow
R-cran-som
rubygem-ai4r Set NO_ARCH for remaining rubygem-* ports with no arch dependent files 2015-07-02 16:01:06 +00:00
rubygem-cdo - Remove RG link 2015-08-13 17:39:31 +00:00
rubygem-ruby-dcl science/rubygem-ruby-dcl: Fix category. 2015-03-09 17:36:19 +00:00
rubygem-ruby-netcdf - Move science/rubygem-netcdf to science/rubygem-ruby-netcdf 2015-05-24 15:35:51 +00:00
sigrok-cli - Bump PORTREVISION after libzip update 2015-08-28 10:48:41 +00:00
sigrok-firmware Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
sigrok-firmware-fx2lafw cleanup plist 2014-12-20 19:35:10 +00:00
sigrok-firmware-utils Switch default python3 version from 3.3 to 3.4. 2015-01-10 23:15:27 +00:00
silo - Update to 1.8.15 2015-05-24 08:10:28 +00:00
simlib - Strip library 2015-05-17 14:43:37 +00:00
simsmith MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
step Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
svmlight - Add LICENSE 2015-03-07 03:18:42 +00:00
szip - Use LIBS 2015-02-18 16:19:52 +00:00
udunits - Update to 2.2.19 2015-04-03 17:28:32 +00:00
v_sim Part 1 of adding USE_GNOME=intltool to ports that require it. 2015-08-02 20:23:55 +00:00
veusz
vmd 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8 2015-08-19 04:38:46 +00:00
xmakemol cleanup plist 2014-12-20 19:35:10 +00:00
Makefile - Add science/orthanc-postgresql 2015-07-28 14:48:32 +00:00