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freebsd-ports/science
History
Yuri Victorovich 62851afa29 science/py-chempy: python2 is deprecated for this version of chempy.
2018-09-21 17:59:14 +00:00
..
2d-rewriter
abinit Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
afni Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
aircraft-datcom Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
ALPSCore Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
antioch Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-based 2018-09-18 09:28:34 +00:00
atom science/atom: Corrections 2018-09-04 16:42:27 +00:00
atompaw science/atompaw: Update 4.1.0.3 -> 4.1.0.4 2018-09-20 15:00:46 +00:00
avogadro Change x11/xorgproto to become a build dep 2018-09-11 18:34:27 +00:00
bddsolve devel/boost-*: update to 1.68.0 2018-08-09 06:58:30 +00:00
bft
bodr
brian Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
buddy
cdcl Add EXAMPLES options to ports that should have one. 2018-09-10 13:15:47 +00:00
cdf Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
cdo Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
cgnslib After an include, PLIST_SUB must be appended to, not overwritten. 2018-09-10 13:11:23 +00:00
cgribex
checkmol
chemical-mime-data
chemps2 Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
chemtool
chemtool-devel
chrono Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
clhep Previous commit unbroke on powerpc64. 2018-09-18 08:21:26 +00:00
clipper Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
colt Mark as broken on powerpc64. 2018-06-08 02:35:17 +00:00
coot Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
cp2k science/cp2k: Require the option OPENMP=on in fftw3 for options OPENMP and OPENMP_MPI 2018-09-14 07:58:05 +00:00
crf++ science/crf++: Fix build with Clang 6 2018-09-01 10:29:11 +00:00
dalton science/dalton: Fix license. 2018-09-02 07:53:31 +00:00
datawarrior New port: science/datawarrior: Chemistry-aware multi-purpose data visualization and analysis program 2018-08-27 06:15:56 +00:00
dcl Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
devisor
dft_tools Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
dftbplus science/dftbplus: Correct license; Correct patches 2018-09-13 19:16:12 +00:00
dkh Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
dlib-cpp Set MAINTAINER of mine ports to @FreeBSD.org email. 2018-08-09 14:24:37 +00:00
dlpoly-classic Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
eccodes Update MASTER_SITES and WWW 2018-09-06 18:23:25 +00:00
ecs Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
epte
erd Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
fastcap
fasthenry
fisicalab Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
fleur science/fleur: Add the forgotten patches. 2018-09-03 07:35:04 +00:00
fsom
fvcom Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
fvcom-mpi
fvm Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
gabedit Change x11/xorgproto to become a build dep 2018-09-11 18:34:27 +00:00
gchemutils science/gchemutils: mark BROKEN if XUL option is chosen 2018-06-23 10:41:05 +00:00
gdma Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
getdp - Update to 3.0.2. 2018-09-11 14:51:17 +00:00
ghemical science/libint: Update 1.1.6 -> 1.2.1 2018-08-27 22:56:43 +00:00
ghmm
gnudatalanguage Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
gramps
grib_api Update to 1.27.0 2018-09-06 18:23:31 +00:00
gromacs science/gromacs: Update 2018.2 -> 2018.3 2018-08-24 17:52:09 +00:00
gsmc
gtamsanalyzer
gwyddion - Make NLS support optional 2018-09-12 14:13:14 +00:00
h5utils Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
harminv Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
hdf Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
hdf5 Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
hdf5-18 Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
hypre Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
iboview Change x11/xorgproto to become a build dep 2018-09-11 18:34:27 +00:00
InsightToolkit Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
isaac-cfd Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
jdftx science/jdftxL Update 1.4.2-73 -> 1.4.2-74 2018-09-01 19:10:46 +00:00
jstrack Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
kalzium Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
kalzium-kde4 Deprecate KDE4 software in categories graphics-textproc. 2018-08-30 18:23:24 +00:00
kst2 Fix build with Qt 5.11 2018-08-31 08:57:17 +00:00
lammps New port: science/lammps: Classical molecular dynamics code with a focus on materials modeling 2018-09-06 06:31:27 +00:00
lamprop
libaec
libccp4 Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
libcint science/libcint: Update 3.0.12 -> 3.0.13 2018-06-15 08:48:31 +00:00
libctl Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
libefp
libgeodecomp devel/boost-*: update to 1.68.0 2018-08-09 06:58:30 +00:00
libghemical science/libint: Update 1.1.6 -> 1.2.1 2018-08-27 22:56:43 +00:00
libgridxc New port: science/libgridxc: Library to compute the exchange and correlation energy and potentials 2018-09-04 15:03:13 +00:00
libint science/libint: PORTSCOUT=limit 2018-08-30 17:24:44 +00:00
libint2 science/libint2: Add configure options needed for depending ports; Add STATIC port option 2018-08-29 03:54:05 +00:00
libkml devel/google{test,mock}: update to 1.8.1 2018-08-31 20:14:40 +00:00
liblinear Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
liboglappth
libquantum
libssm science/libssm: Fix build: put spaces between quotedstrings and defined values in C 2018-07-13 04:58:15 +00:00
libsvm Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
libsvm-python
libxc Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
linsmith
lm science/lm: USES=python only when PYTHON=ON 2018-09-09 21:16:02 +00:00
luscus New port: science/luscus: Molecular editor and viewer 2018-09-14 07:44:45 +00:00
madness New port: science/madness: Multiresolution adaptive numeric environment for scientific simulation 2018-08-27 07:56:14 +00:00
massxpert Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
mbdyn Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix New port: science/mdynamix: General purpose molecular dynamics code 2018-09-06 05:14:01 +00:00
medit
meep Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
mei
metaf2xml
metaphysicl science/metaphysicl: Update 0.3.0 -> 0.3.0.1 2018-09-08 15:21:32 +00:00
minc2 Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
mmdb2 science/mmdb2: Update 2.0.12 -> 2.0.16 2018-07-07 23:40:51 +00:00
mol2ps
MOOSE-neural-simulator Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
mpb Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
mpqc science/mpqc: Add -lmpich to LDFLAGS: this fixes science/libghemical build 2018-09-07 02:23:54 +00:00
msms science/msms: Add back NO_WRKSUBDIR 2018-09-10 07:09:49 +00:00
multiwfn Fix typo in version. 2018-08-27 13:51:29 +00:00
namd science/namd: Remove RESTRICTED because LICENSE_PERMS is restrictive 2018-09-10 06:59:36 +00:00
ncs Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
netcdf Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
netcdf-cxx
netcdf-fortran Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
nifticlib
nwchem science/nwchem: Add build-time python dependency 2018-09-01 18:39:48 +00:00
octopus New port: science/octopus: Scientific program aimed at the ab initio virtual experimentation 2018-08-24 17:54:03 +00:00
openbabel science/openbabel: Take maintainership; Add the GUI option using wxWidgets-3.0 2018-06-12 07:39:34 +00:00
openkim Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
openmx science/openmx: BROKEN on i386 pending the llvm bug resolution 2018-09-15 03:52:28 +00:00
openstructure Change x11/xorgproto to become a build dep 2018-09-11 18:34:27 +00:00
p5-Algorithm-SVMLight Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-3DBuilder Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Bond-Find Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Canonicalize Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Elements Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-MDLMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-Mopac Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-PDB Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SLN Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMARTS Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMILES Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-VRML Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-XYZ Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-FormulaPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-InternalCoords Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Isotope Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MacroMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MidasPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mok Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mol - Add LICENSE 2018-06-26 09:07:15 +00:00
p5-Chemistry-Pattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Reaction Update WWW 2018-07-29 19:26:49 +00:00
p5-Chemistry-Ring Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-BUFR Remove MASTER_SITE_SUBDIR 2018-09-10 20:27:04 +00:00
p5-Geo-Coordinates-Converter Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter-iArea Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-ReadGRIB Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-WebService-Elevation-USGS Update WWW 2018-05-27 20:15:16 +00:00
p5-Mcstas-Tools
p5-PerlMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Physics-Unit Update WWW 2018-05-27 20:15:16 +00:00
paje
paraview Change x11/xorgproto to become a build dep 2018-09-11 18:34:27 +00:00
pcmsolver Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
PETSc science/PETSc: Update 3.9.3 -> 3.9.4 2018-09-12 06:33:44 +00:00
pnetcdf Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
psychopy Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
pulseview devel/boost-*: update to 1.68.0 2018-08-09 06:58:30 +00:00
py-abipy science/py-abipy: Update 0.5.0 -> 0.6.0 2018-08-24 18:31:51 +00:00
py-ase Never use ${FLAVOR} directly in dependencies, FLAVOR is not transitive. 2018-09-14 12:19:48 +00:00
py-cdo Update to 1.4.0 2018-09-20 19:27:39 +00:00
py-chempy science/py-chempy: python2 is deprecated for this version of chempy. 2018-09-21 17:59:14 +00:00
py-coards
py-DendroPy
py-dlib Set MAINTAINER of mine ports to @FreeBSD.org email. 2018-08-09 14:24:37 +00:00
py-gpaw New port: science/py-gpaw: DFT and beyond within the projector-augmented wave method in chemistry 2018-09-01 18:31:54 +00:00
py-gsd science/py-gsd: Update 1.5.2 -> 1.5.3 2018-08-28 15:46:05 +00:00
py-h5py Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
py-hcluster Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-kinematics Add py-kinematics 0.0.7 2018-06-24 20:05:42 +00:00
py-MDAnalysis Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-MDAnalysisTests Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mdp Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mlpy Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
py-mmtf-python Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-molmod New port: science/py-molmod: Collection of molecular modelling tools for python 2018-09-14 03:10:59 +00:00
py-netCDF4 Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
py-obspy Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
py-OpenFermion science/py-OpenFermion: Update 0.7 -> 0.8 2018-07-17 17:41:26 +00:00
py-openpiv Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-paida Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-phono3py New port: science/py-phono3py: Software to calculate phonon-phonon interaction and related properties 2018-09-14 05:37:12 +00:00
py-phonopy New port: science/py-phonopy: Package for phonon calculations at harmonic and quasi-harmonic levels 2018-09-14 05:01:18 +00:00
py-pupynere
py-pyaixi
py-pydicom - Update to 1.1.0 2018-06-22 03:06:51 +00:00
py-PyFR New port: science/py-PyFR: Framework for solving advection-diffusion type problems 2018-09-21 07:11:11 +00:00
py-pymatgen science/py-pymatgen: Update 2018.8.10 -> 2018.9.1 2018-09-17 20:29:11 +00:00
py-pymol science/py-pymol: Update 2.1.0 -> 2.2.0 2018-09-17 20:48:45 +00:00
py-pyosf Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-PyQuante Mark as broken on aarch64. 2018-06-25 04:54:53 +00:00
py-pysal Update to 1.14.4 2018-07-29 19:17:58 +00:00
py-pyteomics Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics.biolccc
py-qspin
py-quantities science/py-quantities: Update 0.12.1 -> 0.12.2 2018-07-04 19:21:46 +00:00
py-rmf science/py-rmf: Correct version 2018-08-30 17:34:27 +00:00
py-ScientificPython science/py-ScientificPython: Change WWW URL; Change to CHEESESHOP 2018-06-30 16:49:08 +00:00
py-scikit-fuzzy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-learn science/py-scikit-learn: update to 0.19.2 2018-07-30 09:38:14 +00:00
py-scikit-sparse Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
py-scimath Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scipy Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
py-scoria Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-SimpleSpectral New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00
py-spglib science/py-spglib: Update 1.10.4.1 -> 1.10.4.11 2018-09-19 18:35:55 +00:00
py-veusz Remove all := from BUILD_DEPENDS, here are never needed. 2018-07-09 08:40:17 +00:00
py-ws2300
pybrain Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pycdf
pynn
qbox science/qbox: Update 1.66.1 -> 1.66.2 2018-09-13 06:34:49 +00:00
qcl
qmcpack Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
qtresistors Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
quantum-espresso Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
qwalk science/qwalk: Add PORTSCOUT=limit 2018-08-30 17:50:38 +00:00
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 - Update to 1.7-0 2018-08-10 10:00:35 +00:00
R-cran-eco
R-cran-Epi - Update to 2.32 2018-08-27 02:22:54 +00:00
R-cran-epicalc
R-cran-etm - Update to 1.0.4 2018-08-20 09:30:52 +00:00
R-cran-fastICA
R-cran-kernlab - Update to 0.9-27 2018-08-13 08:44:29 +00:00
R-cran-snow - Update to 0.4-3 2018-09-18 06:51:54 +00:00
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Update 2018_03_3 -> 2018_03_4 2018-08-18 06:59:22 +00:00
rmf Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
rubygem-ai4r
rubygem-cdo Update to 1.4.0 2018-09-20 19:28:05 +00:00
rubygem-rgeo Update to 1.1.1 2018-08-29 19:10:51 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl science/rubygem-ruby-dcl: update to 1.8.1 2018-07-10 15:12:47 +00:00
rubygem-ruby-netcdf
siesta New port: science/siesta: Program to perform efficient electronic structure calculations 2018-09-03 17:51:32 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
sigrok-firmware-utils Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
silo Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
simlib science/simlib: Fix build 2018-07-07 21:09:10 +00:00
simsmith
spglib science/spglib: Update 1.10.3 -> 1.10.4 2018-08-08 23:10:44 +00:00
step Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
step-kde4 Deprecate KDE4 software in categories graphics-textproc. 2018-08-30 18:23:24 +00:00
svmlight
szip Auto-accept SZIP license, otherwise hundreds of ports are skipped 2018-06-06 12:13:19 +00:00
teem New port: science/teem: Libraries for representing, processing and visualizing scientific data 2018-09-02 06:43:29 +00:00
tfel devel/boost-*: update to 1.68.0 2018-08-09 06:58:30 +00:00
triqs Update science/hdf5 to 1.10.2 2018-09-05 22:05:23 +00:00
udunits Remove LICENSE_FILE from PORTDOCS 2018-08-31 14:41:13 +00:00
v_sim Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
vmd science/vmd: Remove RESTRICTED: not required 2018-09-10 07:06:17 +00:00
voro++
wannier90 New port: science/wannier90: Maximally-localized Wannier functions (MLWFs) and Wannier90 2018-09-03 04:09:00 +00:00
xcrysden Bump PORTREVISION for ports depending on the canonical version of GCC 2018-07-29 22:18:44 +00:00
xdrawchem Change x11/xorgproto to become a build dep 2018-09-11 18:34:27 +00:00
xfce4-equake-plugin
xmakemol
Makefile New port: science/py-PyFR: Framework for solving advection-diffusion type problems 2018-09-21 07:11:11 +00:00