freebsd-ports

adun

- reset MAINTAINER

2012-06-26 05:44:19 +00:00

ariadne

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

artemis

Decommissioning java 1.5 (EOLed since October 2009):

2012-12-10 11:25:27 +00:00

avida

Convert USE_NCURSES by USES=ncurses

2013-05-06 15:34:17 +00:00

babel

- Mark conflict with science/openbabel

2012-12-11 14:24:51 +00:00

biococoa

- cleanup comments

2012-10-13 13:39:56 +00:00

biojava

Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP

2012-12-11 07:26:38 +00:00

blast

- Take maintainership

2012-10-01 14:55:55 +00:00

blat

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

boinc-simap

Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk

2013-04-29 12:20:35 +00:00

chemeq

Convert USE_BISON to USES= bison

2013-03-08 11:32:11 +00:00

clustalw

…

consed

…

crux

- adoption of optionsNG

2013-03-18 06:48:55 +00:00

dotter

- Mark broken checksum mismatch

2013-03-25 01:41:31 +00:00

embassy

- Convert USE_ICONV=yes to USES=iconv

2013-04-27 08:50:46 +00:00

emboss

- Take maintainership

2012-10-01 14:55:55 +00:00

fasta

…

fasta3

- Take maintainership

2012-10-01 14:55:55 +00:00

fastdnaml

…

finchtv

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

fluctuate

…

garlic

Fix typos in COMMENT

2012-07-25 06:32:06 +00:00

genpak

- update png to 1.5.10

2012-06-01 05:26:28 +00:00

gff2ps

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gmap

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gperiodic

- Convert USE_GETTEXT to USES (part 3)

2013-04-24 18:10:30 +00:00

grappa

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hmmer

- Take maintainership

2012-10-01 14:55:55 +00:00

iolib

- Update to 1.13.0

2013-04-30 15:41:49 +00:00

jalview

Decommissioning java 1.5 (EOLed since October 2009):

2012-12-10 11:25:27 +00:00

lagan

- Update to version 2.0

2012-11-15 07:04:29 +00:00

lamarc

- Fix build with clang

2012-12-03 11:27:47 +00:00

libgenome

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libsbml

- adoption of optionsNG

2013-03-18 06:50:12 +00:00

linux-foldingathome

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mafft

Mark as broken on sparc64: depends on thread-local storage, which is not

2012-09-08 08:30:39 +00:00

mapm3

…

migrate

- Update to 3.5.1

2013-05-26 07:49:47 +00:00

molden

- Update to 5.0.6

2013-04-26 06:57:37 +00:00

mopac

Workaround the way mopac installs executables.

2013-04-29 17:30:09 +00:00

mrbayes

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mummer

…

muscle

Fix typos in COMMENT

2012-07-24 07:19:21 +00:00

ncbi-toolkit

- Update to 2012.06.20

2013-03-14 05:27:58 +00:00

njplot

s/X11BASE/LOCALBASE/, or equivalent.

2012-06-24 21:53:38 +00:00

ortep3

…

p5-AcePerl

- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or

2012-06-10 18:42:48 +00:00

p5-Bio-ASN1-EntrezGene

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p5-Bio-Das

Cleanup supporting perl version 5.8 and 5.10,

2012-12-17 15:39:36 +00:00

p5-Bio-Das-Lite

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p5-Bio-GFF3

- Update to 1.5

2012-12-16 04:22:15 +00:00

p5-Bio-Glite

For perl@ owned ports:

2013-03-29 00:44:53 +00:00

p5-Bio-Graphics

Add missing item to pkg-plist reported by QAT but not reported by poudriere.

2013-03-03 15:22:43 +00:00

p5-Bio-MAGETAB

For perl@ owned ports:

2013-03-29 00:44:53 +00:00

p5-Bio-NEXUS

For perl@ owned ports:

2013-03-29 00:44:53 +00:00

p5-Bio-Phylo

- Update to 0.52 [1]

2013-02-16 14:58:51 +00:00

p5-Bio-SCF

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p5-bioperl

- Take maintainership

2012-10-01 14:55:55 +00:00

p5-bioperl-run

- Remove SITE_PERL from *_DEPENDS

2012-06-30 14:53:22 +00:00

paml

…

phd2fasta

Remove unneeded escaping

2013-04-26 16:23:13 +00:00

phrap

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phred

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phylip

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phyml

- Update to 20121109.

2013-02-04 10:07:30 +00:00

platon

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plink

Add new ports biology/plink [1] and biology/plinkseq [2]:

2012-09-27 09:59:25 +00:00

plinkseq

Fix build with protobuf-2.5.0

2013-03-21 14:09:22 +00:00

povchem

- remove empty files

2013-02-15 08:57:19 +00:00

primer3

- Take maintainership

2012-10-01 14:55:55 +00:00

protomol

- adoption of optionsNG

2013-03-18 06:54:39 +00:00

psi88

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py-biopython

- update to 1.60

2012-09-25 08:06:42 +00:00

pycogent

- Update to 1.5.3

2012-10-08 03:17:02 +00:00

pyfasta

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pymol

Switch from libglut to freeglut and retire libglut. Libglut hasn't been

2012-08-04 22:52:02 +00:00

python-nexus

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rasmol

…

recombine

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ruby-bio

- adoption of optionsNG

2013-03-18 06:55:42 +00:00

seaview

- Update to 4.4.1

2013-03-26 01:08:40 +00:00

seqan

- convert USE_CMAKE to USES

2013-03-22 20:06:14 +00:00

seqio

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sim4

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ssaha

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

t_coffee

- Update to 9.03.

2013-01-14 08:04:38 +00:00

tinker

- Update to 6.2.05

2013-05-29 05:25:49 +00:00

treepuzzle

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treeviewx

- Reassign to the heap at maintainer's request

2012-10-01 14:45:16 +00:00

tRNAscan-SE

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ugene

Unbreak on 7.X and i386 systems.

2013-02-25 13:00:15 +00:00

velvet

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wise

Fix build by adding an explicit dep on pkgconf

2013-05-03 20:48:34 +00:00

xdrawchem

- Strip header at request of original creator

2013-01-27 05:55:20 +00:00

xmolwt

Finish converting the whole ports tree to USES=pkgconfig

2013-04-23 14:20:25 +00:00

Makefile

Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.

2013-02-23 04:50:48 +00:00