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ariadne
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artemis
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- Fix shebangs
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2017-04-21 16:28:25 +00:00 |
avida
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Mark various ports as broken on armv6: invokes x86 asm.
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2017-02-26 12:56:41 +00:00 |
babel
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bcftools
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bedtools
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biococoa
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biojava
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- Mark it BROKEN
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2016-10-28 01:49:40 +00:00 |
blat
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biology/blat: Fix build on DF (taken from dports)
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2016-12-18 04:46:53 +00:00 |
bowtie
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- Fix shebangs
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2017-04-22 09:25:44 +00:00 |
bowtie2
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Update devel/tbb to 2017.5
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2017-03-07 12:44:41 +00:00 |
bwa
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Mark various ports broken on aarch64 and armv6.
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2017-01-31 03:40:46 +00:00 |
cd-hit
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
cdbfasta
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Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
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2017-01-20 20:33:30 +00:00 |
chemeq
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biology/chemeq: fix build on GCC (taken from dports)
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2016-12-18 04:22:26 +00:00 |
clustalw
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consed
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crux
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
diamond
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biology/diamond: Update to version 0.8.38
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2017-04-21 14:46:07 +00:00 |
emboss
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fasta
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${RM} already has -f.
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2016-10-21 12:51:40 +00:00 |
fasta3
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fastdnaml
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fastool
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Never set WRKSRC when using USE_GITHUB.
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2017-01-03 18:12:13 +00:00 |
fasttree
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
fastx-toolkit
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fluctuate
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garlic
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gff2ps
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gmap
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Mark various ports as broken on armv6: invokes x86 asm.
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2017-02-26 12:56:41 +00:00 |
gperiodic
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Remove libintl.so.9 compatibility link that was added in r374303 to
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2016-12-08 19:52:19 +00:00 |
grappa
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hmmer
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htslib
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Use USES=pathfix where applicable.
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2016-10-21 15:21:13 +00:00 |
iolib
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Fix USE_GITHUB's GH_TAGNAME usage.
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2017-02-28 08:33:44 +00:00 |
jalview
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jellyfish
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
lagan
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lamarc
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biology/lamarc: Fix build on DF (taken from dports)
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2016-12-18 04:34:33 +00:00 |
libgtextutils
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Use USES=pathfix where applicable.
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2016-10-21 15:21:13 +00:00 |
libsbml
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
linux-foldingathome
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mafft
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mapm3
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migrate
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molden
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
mopac
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
mrbayes
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mummer
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muscle
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Mark various leaf ports broken on aarch64, and, where appropriate, other
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2016-11-11 09:31:02 +00:00 |
ncbi-blast+
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
ncbi-toolkit
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Remove libjpeg.so.11 compatibility link that was added in r374303 to
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2016-12-08 16:39:11 +00:00 |
njplot
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biology/njplot: Add site in MASTER_SITES because package builders are
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2016-11-28 15:19:42 +00:00 |
p5-AcePerl
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Move -fPIC to where Linux puts it so it is limited to a single library.
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2017-02-13 22:43:58 +00:00 |
p5-Bio-ASN1-EntrezGene
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- Add LICENSE
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2016-12-18 15:25:13 +00:00 |
p5-Bio-Coordinate
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- Add p5-Bio-Coordinate 1.007001
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2016-12-19 15:54:39 +00:00 |
p5-Bio-Das
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- Add LICENSE
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2016-12-18 15:25:18 +00:00 |
p5-Bio-Das-Lite
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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Bump PORTREVISION for ports affected by the fix the last commit.
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2017-01-31 16:21:45 +00:00 |
p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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- Add LICENSE_FILE
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2016-12-18 15:25:22 +00:00 |
p5-Bio-SCF
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p5-BioPerl
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- Fix shebangs
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2017-04-22 12:45:43 +00:00 |
p5-BioPerl-Run
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Bump PORTREVISION for ports affected by the fix the last commit.
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2017-01-31 16:21:45 +00:00 |
p5-transdecoder
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Never set WRKSRC when using USE_GITHUB.
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2017-01-03 18:12:13 +00:00 |
paml
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Cleanup no longer needed CHMOD usage after r424898.
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2016-11-02 22:45:14 +00:00 |
phrap
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phred
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phylip
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phyml
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plink
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
plinkseq
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biology/plinkseq: unbreak with clang 4.0
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2017-02-27 14:09:25 +00:00 |
primer3
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protomol
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biology/protomol: Support build with C++11 (taken from dports)
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2016-12-18 05:34:42 +00:00 |
psi88
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
py-biom-format
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py-biopython
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pycogent
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pyfasta
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python-nexus
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- Update to 1.42
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2017-03-01 07:00:37 +00:00 |
recombine
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ruby-bio
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rubygem-bio
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Update to 1.5.1
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2017-02-06 23:03:17 +00:00 |
samtools
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seaview
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biology/seaview: Update version 4.6=>4.6.1
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2017-04-11 18:58:18 +00:00 |
seqan
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seqan1
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seqan-apps
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
seqio
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seqtools
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
sim4
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slclust
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Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
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2017-01-20 20:33:30 +00:00 |
ssaha
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
t_coffee
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
tinker
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Bump PORTREVISIONs for ports depending on the canonical version of GCC and
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2017-04-01 15:23:30 +00:00 |
treepuzzle
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treeviewx
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Mark the remaining ports depending on Google Code as DEPRECATED, with an
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2017-03-03 16:00:19 +00:00 |
trimmomatic
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tRNAscan-SE
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ugene
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- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
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2017-01-09 13:16:49 +00:00 |
vcftools
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Assume "pkg-config zlib" works after 9.x reached EOL
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2017-01-03 17:06:49 +00:00 |
velvet
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wise
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Remove libintl.so.9 compatibility link that was added in r374303 to
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2016-12-08 19:52:19 +00:00 |
xmolwt
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Remove libintl.so.9 compatibility link that was added in r374303 to
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2016-12-08 19:52:19 +00:00 |
Makefile
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Move devel/rubygem-bio to biology/rubygem-bio
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2017-02-05 04:26:56 +00:00 |