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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-20 04:02:27 +00:00
freebsd-ports/science
TAKATSU Tomonari 2f9947f1c4 - Update to 0.6-2.1
- Fix LICENSE section
2018-06-20 03:34:55 +00:00
..
2d-rewriter
abinit Re-add port: science/abinit: Full-featured atomic-scale first-principles simulation software 2018-06-14 05:49:39 +00:00
afni
aircraft-datcom
ALPSCore devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
antioch New port: science/antioch: C++ Chemical Kinetics, Thermodynaimics, and Transport Library 2018-04-18 06:51:47 +00:00
atompaw New port: science/atompaw: Tool for projector augmented wave functions for molecular simulations 2018-06-14 05:52:57 +00:00
avogadro devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bddsolve devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bft
bodr
brian - Remove the unneeded line 2018-05-29 07:52:43 +00:00
buddy
cdcl
cdf
cdo Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
cgnslib
cgribex
checkmol - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
chemical-mime-data
chemps2 science/chemps2: Update 1.8.6 -> 1.8.7 2018-03-26 09:47:56 +00:00
chemtool
chemtool-devel
clhep science/clhep: Update version 2.3.1.1=>2.4.0.4 2018-04-24 20:51:38 +00:00
colt Mark as broken on powerpc64. 2018-06-08 02:35:17 +00:00
crf++
dcl
devisor
dft_tools New port: science/dft_tools: Interface to DFT codes in TRIQS 2018-06-17 02:42:52 +00:00
dkh
dlib-cpp Upgrade science/dlib-cpp and science/py-dlib to 19.13. 2018-05-28 11:34:44 +00:00
dlpoly-classic
ecs
epte
erd
fastcap
fasthenry
fisicalab
fsom fsom: Tiny C library for managing SOM (Self-Organizing Maps) neural networks 2018-04-16 18:15:30 +00:00
fvcom
fvcom-mpi
fvm - Update WWW 2018-03-31 09:33:26 +00:00
gchemutils Fix the build on HEAD. 2018-05-20 15:23:23 +00:00
gdma
getdp - Update to 2.11.3. 2018-05-12 22:23:40 +00:00
ghemical
ghmm
gnudatalanguage Upgrade to 0.9.8. 2018-04-07 20:06:19 +00:00
gramps
grib_api Update to 1.26.1 2018-05-17 18:29:50 +00:00
gromacs science/gromacs: Chase the changed tarball 2018-06-16 21:07:10 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
harminv
hdf - Switch to new test framework 2018-04-29 08:33:52 +00:00
hdf5
hdf5-18 Fix plist whith FORTRAN option. 2018-05-07 19:21:09 +00:00
hypre Mark broken on powerpc64. 2018-06-08 02:39:46 +00:00
iboview devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
InsightToolkit
isaac-cfd
jstrack
kalzium Update KDE Applications to 18.04.2 2018-06-10 10:39:35 +00:00
kalzium-kde4
kst2 Add explicit dependence on Qt components 2018-04-07 18:49:01 +00:00
lamprop
libaec
libcint science/libcint: Update 3.0.12 -> 3.0.13 2018-06-15 08:48:31 +00:00
libctl
libefp
libgeodecomp devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
libghemical
libint
libkml Convert PORTEXAMPLES=* to PLIST entries 2018-05-19 11:06:20 +00:00
liblinear
liboglappth
libquantum
libsvm
libsvm-python
libxc
linsmith Make libgnome and libgnomeui not implying esound dependency 2018-03-26 12:38:56 +00:00
massxpert
mbdyn math/suitesparse: Update 4.0.2 -> 5.2.0 2018-04-26 06:41:30 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps science/mcxtrace-comps: remove comment line 2018-05-07 19:43:04 +00:00
medit
meep
mei - Switch to new test framework 2018-04-26 08:33:48 +00:00
metaf2xml
metaphysicl New port: science/metaphysicl: Metaprogramming, operator-overloaded classes for numerical simulations 2018-04-18 04:59:15 +00:00
minc2
mol2ps - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
MOOSE-neural-simulator
mpb
mpqc
mpqc-mpich
ncs
netcdf Fix packaging when DAP option is disabled 2018-04-14 23:59:26 +00:00
netcdf-cxx
netcdf-fortran
nifticlib
openbabel science/openbabel: Take maintainership; Add the GUI option using wxWidgets-3.0 2018-06-12 07:39:34 +00:00
openkim - Switch to new test framework 2018-04-23 08:33:47 +00:00
p5-Algorithm-SVMLight Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-3DBuilder Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Bond-Find Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Canonicalize Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Elements Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-MDLMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-Mopac Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-PDB Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SLN Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMARTS Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMILES Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-VRML Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-XYZ Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-FormulaPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-InternalCoords Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Isotope Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MacroMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MidasPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mok Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Pattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Reaction Add LICENSE 2018-06-05 18:57:18 +00:00
p5-Chemistry-Ring Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-BUFR Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter-iArea Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-ReadGRIB Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-WebService-Elevation-USGS Update WWW 2018-05-27 20:15:16 +00:00
p5-Mcstas-Tools
p5-PerlMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Physics-Unit Update WWW 2018-05-27 20:15:16 +00:00
paje
paraview science/paraview: Update 5.2.0 -> 5.5.0 2018-06-09 08:03:54 +00:00
pcmsolver Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
PETSc Mark as broken on various tier-2 archs. 2018-06-08 02:29:18 +00:00
pnetcdf Add OPENMPI3 option 2018-05-20 18:56:03 +00:00
psychopy - Update to 1.90.2 2018-05-24 10:34:25 +00:00
pulseview devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
py-abipy science/py-abipy: Change FLAVOR -> PY_FLAVOR 2018-06-19 01:18:08 +00:00
py-cdo Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-coards Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-DendroPy
py-dlib Upgrade science/dlib-cpp and science/py-dlib to 19.13. 2018-05-28 11:34:44 +00:00
py-gsd New port: science/py-gsd: GSD (General Simulation Data) file format for Python 2018-05-13 20:32:41 +00:00
py-h5py Update to 2.8.0 2018-06-05 18:55:35 +00:00
py-hcluster
py-MDAnalysis New port: science/py-MDAnalysis: Python library to analyze molecular dynamics trajectories 2018-05-14 00:15:31 +00:00
py-MDAnalysisTests New port: science/py-MDAnalysisTests: Test code and the trajectory data for test cases of MDAnalysis 2018-05-14 00:16:52 +00:00
py-mdp
py-mlpy
py-mmtf-python science/py-mmtf-python: Update 1.1.0 -> 1.1.2 2018-05-22 16:51:49 +00:00
py-netCDF4 science/py-netCDF4: Add USE_PYTHON=concurrent 2018-06-19 00:03:37 +00:00
py-obspy
py-OpenFermion science/py-OpenFermion: Update 0.4-29 -> 0.6 2018-03-30 23:18:19 +00:00
py-openpiv Add new port science/py-openpiv: 2018-04-02 08:43:54 +00:00
py-paida
py-pupynere Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyaixi Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pydicom
py-pymatgen science/py-pymatgen: Add USE_PYTHON=concurrent 2018-06-19 00:10:16 +00:00
py-pymol Move devel/py-msgpack-python to devel/py-msgpack 2018-04-22 18:29:51 +00:00
py-pyosf Unbreak 2018-03-26 19:34:27 +00:00
py-PyQuante science/py-PyQuante: Change to USES=2.7 2018-06-19 02:14:17 +00:00
py-pysal Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyteomics Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyteomics.biolccc Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-qspin
py-quantities New port: science/py-quantities: Support for physical quantities with units, based on numpy 2018-03-29 20:37:39 +00:00
py-scikit-fuzzy
py-scikit-learn
py-scikit-sparse math/suitesparse: Update 4.0.2 -> 5.2.0 2018-04-26 06:41:30 +00:00
py-scimath Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-scipy - Update to 1.1.0 2018-05-24 12:23:27 +00:00
py-scoria
py-SimpleSpectral New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00
py-spglib science/py-spglib: Fix typo in COMMENT 2018-06-19 02:20:42 +00:00
py-tensorflow Deprecate ports broken for more than 6 months 2018-05-05 10:49:36 +00:00
py-veusz
py-ws2300
pybrain
pycdf
pynn
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.30 2018-05-17 06:30:11 +00:00
R-cran-epicalc
R-cran-etm - Update to 0.6-2.1 2018-06-20 03:34:55 +00:00
R-cran-fastICA
R-cran-kernlab - Update to 0.9-26 2018-05-09 00:53:54 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Update 2018_03_1 -> 2018_03_2 2018-06-17 19:15:55 +00:00
rubygem-ai4r
rubygem-cdo Update to 1.3.6 2018-04-04 18:53:54 +00:00
rubygem-rgeo Add rubygem-rgeo 1.0.0 2018-04-07 16:32:18 +00:00
rubygem-rgeo-geojson Add rubygem-rgeo-geojson 2.0.0 2018-04-07 16:32:45 +00:00
rubygem-rgeo-proj4 Add rubygem-rgeo-proj4 1.0.0 2018-04-07 16:33:14 +00:00
rubygem-rgeo-shapefile Add rubygem-rgeo-shapefile 1.0.0 2018-04-07 16:33:40 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simlib
simsmith
spglib New port: science/spglib: C library for finding and handling crystal symmetries 2018-06-15 17:42:24 +00:00
step Update KDE Applications to 18.04.2 2018-06-10 10:39:35 +00:00
step-kde4
svmlight
szip Auto-accept SZIP license, otherwise hundreds of ports are skipped 2018-06-06 12:13:19 +00:00
tfel Adjust USES to fix builds on gcc-based architectures. 2018-06-18 19:03:03 +00:00
triqs science/triqs: Limit portscout to valid versions 2018-06-17 17:57:45 +00:00
udunits
v_sim
vmd
voro++
xfce4-equake-plugin
xmakemol
Makefile New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00