John Marino 4fa4056388 biology/mummer: Use OPSYS with OSVERSION ... I don't think selecting clang as a function of OSVERSION is generally desired, but if it's going to happen, make sure FreeBSD-specific conditions are limited to FreeBSD by comparing OPSYS first.		2014-07-19 22:00:16 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava	- add stage support	2014-06-01 10:37:22 +00:00
blast	Mark as broken: no distinfo provided	2014-06-22 22:06:01 +00:00
blat	Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk	2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw	Multiple ports: reset maintainers	2014-05-26 02:33:38 +00:00
consed	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
crux
embassy	- Mark BROKEN	2014-06-26 14:38:10 +00:00
emboss	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic	biology/garlic: Stage properly to unbreak	2014-07-17 10:13:06 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer	Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.	2014-07-15 14:54:54 +00:00
iolib	- I forgot to svn add a new patch	2014-05-31 18:03:08 +00:00
jalview
lagan
lamarc
libsbml	- Update to 5.10.0	2014-05-13 07:04:17 +00:00
linux-foldingathome	Stagify.	2014-07-06 16:05:34 +00:00
mafft	Add DOCS and EXAMPLE options to biology/mafft	2014-05-31 04:18:18 +00:00
mapm3
migrate
molden	Catch a couple of missing convertsion to :tu/:tl	2014-05-05 11:15:53 +00:00
mopac
mrbayes
mummer	biology/mummer: Use OPSYS with OSVERSION	2014-07-19 22:00:16 +00:00
muscle	Update to 3.8.31.	2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot	- add stage support	2014-06-01 11:26:39 +00:00
ortep3
p5-AcePerl	Remove all the bootstrap files (.bs) from the plists.	2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics	Stagify, remove BROKEN.	2014-06-07 01:54:41 +00:00
p5-Bio-MAGETAB	- update to 1.31	2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF	Remove all the bootstrap files (.bs) from the plists.	2014-06-10 12:14:12 +00:00
p5-bioperl	- Update to 1.6.923	2014-05-30 15:46:05 +00:00
p5-bioperl-run	Mark BROKEN: Fails to configure	2014-06-19 21:31:16 +00:00
paml
phd2fasta	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
phrap	Replace maintainer's email address with one that seems to work	2014-05-10 18:07:52 +00:00
phred	Replace maintainer's email address with one that seems to work	2014-05-10 18:07:52 +00:00
phylip
phyml
platon	biology/platon: Unbreak by hosting known distfiles elsewhere	2014-07-13 11:27:44 +00:00
plink
plinkseq
povchem
primer3	Quote ${CC} and similar variables in MAKE_ARGS.	2014-05-20 19:32:39 +00:00
protomol
psi88
py-biopython	- Stage	2014-04-27 01:59:47 +00:00
pycogent	- Stage support [1]	2014-05-02 14:00:13 +00:00
pyfasta
pymol
python-nexus	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
recombine
ruby-bio
seaview	- Update to 4.5.2	2014-06-04 06:28:56 +00:00
seqan	Use gcc on all platforms.	2014-07-10 22:29:52 +00:00
seqio
seqtools	Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist.	2014-07-15 23:11:12 +00:00
sim4
ssaha
t_coffee	Remove indefinite articles and trailing periods from COMMENT, plus	2014-06-09 11:21:52 +00:00
tinker	- Un-break fetch stage: the name scheme of the source tarballs has changed	2014-04-22 19:28:18 +00:00
treepuzzle
treeviewx	Unbreak	2014-06-04 20:08:15 +00:00
tRNAscan-SE	Support stage	2014-05-05 10:26:15 +00:00
ugene
velvet	Fix shebang line in Perl and Python scripts.	2014-06-20 12:54:29 +00:00
wise
xmolwt
Makefile	Remove expired ports:	2014-04-18 11:17:45 +00:00