mirror of
https://git.FreeBSD.org/ports.git
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f20fa89b2c
abundance:
Update stringtie command to also produce gene-level abundances
Output 0 for effective length for now to clearly indicate that it's invalid
normalize: Add --debug option
Updates for latest libxtend API
Test -> Yeast-test
Add Mouse-test suite with multiple mouse data options
Streamline test scripts
Changes: https://github.com/auerlab/fasda/releases
27 lines
544 B
Makefile
27 lines
544 B
Makefile
PORTNAME= fasda
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DISTVERSION= 0.1.5
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Fast and simple differential analysis
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WWW= https://github.com/auerlab/fasda
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LICENSE= BSD2CLAUSE
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc
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RUN_DEPENDS= stringtie>0:biology/stringtie
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USES= localbase
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USE_GITHUB= yes
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GH_ACCOUNT= auerlab
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MAKE_ENV= VERSION=${PORTVERSION}
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INSTALL_TARGET= install-strip
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pre-build:
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cd ${WRKSRC} && make depend LOCALBASE=${LOCALBASE}
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.include <bsd.port.mk>
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