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Max Brazhnikov ecd280d820 Add new ports biology/plink [1] and biology/plinkseq [2]:
PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>
2012-09-27 09:59:25 +00:00
accessibility
arabic
archivers - Reassign to the heap due to mail bounces 2012-09-27 06:21:38 +00:00
astro
audio
benchmarks
biology Add new ports biology/plink [1] and biology/plinkseq [2]: 2012-09-27 09:59:25 +00:00
cad
chinese
comms
converters
databases
deskutils
devel - Update to 1.2.16 2012-09-27 08:42:42 +00:00
dns
editors Allowing openjdk7 build. 2012-09-27 02:48:53 +00:00
emulators
finance - Fix getting currency quotes from new yahoo API using upstream patch 2012-09-26 20:54:55 +00:00
french
ftp - Fix plist issue with slave curl-hiphop caused by last commit 2012-09-27 00:58:04 +00:00
games - Reassign to the heap due to mail bounces 2012-09-27 06:21:38 +00:00
german
graphics - Work around graphics/ilmbase pthread-related brokenness to fix build 2012-09-27 03:58:12 +00:00
hebrew
hungarian
irc
japanese - Chase www/smarty -> www/smarty2 rename 2012-09-26 21:27:31 +00:00
java Tidy up patches. No functional change. 2012-09-27 00:18:41 +00:00
korean
lang Set LICENSE=MIT per <http://www.lua.org/license.html> 2012-09-26 21:29:50 +00:00
mail - Update to 1.0000 2012-09-27 09:03:05 +00:00
math
misc
Mk - Reduce possible confusion in "build and install something" options: most 2012-09-26 16:05:35 +00:00
multimedia
net - Update to 0.9.4 2012-09-27 00:07:44 +00:00
net-im
net-mgmt
net-p2p
news
palm
polish
ports-mgmt
portuguese
print
russian
science
security Fix build on i386 by disabling hardening measures. This is a temporary 2012-09-27 02:57:50 +00:00
shells
sysutils - Update to 0.8.2 2012-09-26 22:04:22 +00:00
Templates
textproc - Update to 0.65 2012-09-27 08:18:12 +00:00
Tools
ukrainian
vietnamese
www - Chase www/smarty -> www/smarty2 rename 2012-09-26 20:43:58 +00:00
x11 Fix build when clang is installed as cc (more specifically when clang-cpp is 2012-09-27 09:45:38 +00:00
x11-clocks
x11-drivers
x11-fm
x11-fonts
x11-servers
x11-themes
x11-toolkits
x11-wm
.cvsignore
CHANGES
COPYRIGHT
GIDs
KNOBS
LEGAL
Makefile
MOVED - Renamed from www/smarty to www/smarty2 to prepare for addition of 2012-09-26 20:33:56 +00:00
README
UIDs
UPDATING

This is the FreeBSD Ports Collection.  For an easy to use
WEB-based interface to it, please see:

	http://www.FreeBSD.org/ports

For general information on the Ports Collection, please see the
FreeBSD Handbook ports section which is available from:

	http://www.FreeBSD.org/doc/en_US.ISO8859-1/books/handbook/ports.html
		for the latest official version
	or:
	The ports(7) manual page (man ports).

These will explain how to use ports and packages.

If you would like to search for a port, you can do so easily by
saying (in /usr/ports):


	make search name="<name>"
	or:
	make search key="<keyword>"

which will generate a list of all ports matching <name> or <keyword>.
make search also supports wildcards, such as:

	make search name="gtk*"

For information about contributing to FreeBSD ports, please see the Porter's
Handbook, available at:

	http://www.FreeBSD.org/doc/en_US.ISO8859-1/books/porters-handbook/

NOTE:  This tree will GROW significantly in size during normal usage!
The distribution tar files can and do accumulate in /usr/ports/distfiles,
and the individual ports will also use up lots of space in their work
subdirectories unless you remember to "make clean" after you're done
building a given port.  /usr/ports/distfiles can also be periodically
cleaned without ill-effect.