mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2025-02-05 11:35:01 +00:00
Code Issues Releases Activity
freebsd-ports/biology
History
Jason W. Bacon f03dcf6979 biology/stacks: Upgrade to 2.3 
Approved by:    jrm (mentor, implicit)
2019-01-12 15:53:00 +00:00
..
artemis
…
avida
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
babel
…
bamtools
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
bcftools
…
bedtools
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
biococoa
…
bowtie
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
bowtie2
…
bwa
…
canu
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
cd-hit
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
cdbfasta
…
checkm
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
chemeq
…
clustal-omega
…
clustalw
…
clustalx
…
consed
…
cytoscape
…
ddocent
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
diamond
biology/diamond: Update to version 0.9.24
2018-12-31 19:00:00 +00:00
emboss
…
exonerate
…
fasta
…
fasta3
…
fastahack
…
fastdnaml
…
fastool
…
fastqc
…
fasttree
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
fastx-toolkit
…
fluctuate
…
freebayes
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
garlic
…
gatk
devel/gradle: Update to 5.0
2018-12-04 17:53:46 +00:00
gff2ps
biology/gff2ps: update 0.98d to 0.98l
2018-12-19 17:34:29 +00:00
gmap
…
gperiodic
…
grappa
…
groopm
biology/groopm fails to build with python3
2019-01-07 09:44:42 +00:00
hisat2
New port: biology/hisat2: Program for mapping next-generation sequencing reads
2019-01-11 16:02:05 +00:00
hmmer
…
htslib
…
hyphy
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
igv
devel/gradle: Update to 5.0
2018-12-04 17:53:46 +00:00
infernal
…
iolib
…
iqtree
biology/iqtree: switch to outsource cmake build
2018-12-27 18:34:44 +00:00
jalview
…
jellyfish
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
kallisto
Update science/hdf5 to 1.10.4
2019-01-05 22:46:53 +00:00
lagan
…
lamarc
…
libgtextutils
…
libsbml
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
linux-foldingathome
…
mafft
…
mapm3
…
migrate
…
molden
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
mopac
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
mrbayes
…
mummer
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
muscle
…
ncbi-blast+
Update dns/libidn2 to 2.1.0
2019-01-06 20:39:43 +00:00
ncbi-cxx-toolkit
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
ncbi-toolkit
Update dns/libidn2 to 2.1.0
2019-01-06 20:39:43 +00:00
ngs-sdk
…
p5-AcePerl
…
p5-Bio-ASN1-EntrezGene
…
p5-Bio-Coordinate
…
p5-Bio-Das
…
p5-Bio-Das-Lite
…
p5-Bio-FeatureIO
…
p5-Bio-GFF3
…
p5-Bio-Glite
…
p5-Bio-Graphics
…
p5-Bio-MAGETAB
…
p5-Bio-NEXUS
…
p5-Bio-Phylo
…
p5-Bio-SCF
…
p5-BioPerl
…
p5-BioPerl-Run
…
p5-transdecoder
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
p5-TrimGalore
…
paml
…
pbbam
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
pbcopper
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
pbseqan
…
pear-merger
…
phrap
…
phred
…
phylip
…
phyml
…
plinkseq
…
primer3
…
protomol
…
psi88
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-biom-format
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-biopython
- Update to 1.73
2018-12-22 04:54:51 +00:00
py-bx-python
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-cutadapt
…
py-fastTSNE
New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNE
2018-12-15 08:58:05 +00:00
py-Genesis-PyAPI
…
py-gffutils
…
py-gtfparse
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-loompy
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-macs2
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-orange3-bioinformatics
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
py-orange3-single-cell
Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.
2019-01-11 15:09:34 +00:00
py-pyfaidx
…
py-pysam
…
pycogent
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
pyfasta
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
python-nexus
…
rainbow
…
recombine
…
ruby-bio
…
rubygem-bio
…
samtools
…
seaview
…
seqan
…
seqan1
…
seqan-apps
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
seqio
…
seqtk
…
seqtools
biology/seqtools: fix build on current, if lld is lld7
2019-01-07 19:54:40 +00:00
sim4
…
slclust
…
smithwaterman
…
stacks
biology/stacks: Upgrade to 2.3
2019-01-12 15:53:00 +00:00
stringtie
…
t_coffee
Bump PORTREVISION for ports depending on the canonical version of GCC
2018-12-12 01:35:33 +00:00
tabixpp
…
treepuzzle
…
trimadap
…
trimmomatic
…
tRNAscan-SE
…
ugene
Update Qt5 to 5.12.0
2018-12-16 14:49:16 +00:00
unanimity
Change cmake default behaviour to outsource.
2018-12-25 20:25:39 +00:00
vcflib
…
vcftools
…
velvet
…
wise
…
Makefile
New port: biology/hisat2: Program for mapping next-generation sequencing reads
2019-01-11 16:02:05 +00:00