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freebsd-ports/biology/hyphy/pkg-descr

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HyPhy is an open-source software package for the analysis of genetic sequences
using techniques in phylogenetics, molecular evolution, and machine learning. It
features a rich scripting language for limitless customization of
analyses. Additionally, HyPhy features support for parallel computing
environments via message passing interface, MPI and it can be compiled as a
shared library and called from other programming environments such as Python and
R.
WWW: http://www.hyphy.org/