Antoine Brodin f1e51f12a7 biology/py-pywgsim: unbreak bulk -a		2024-06-03 12:18:08 +00:00
..
abyss
ad2vcf	biology/ad2vcf: Update to 0.1.6.19	2024-05-19 08:41:41 -05:00
artemis
atac-seq
augustus
avida
babel
bamtools
bamutil
barrnap
bbmap
bcf-score
bcftools
bedtools
bfc
bifrost
bio-mocha
bioawk
biococoa
biolibc	biology/biolibc: Update to 0.2.6.4	2024-05-19 08:40:24 -05:00
biolibc-tools
bioparser
biosig
biosoup
biostar-tools	biology/biostar-tools: Update to 1.11	2024-06-03 06:38:30 -05:00
bolt-lmm
bowtie
bowtie2	biology/bowtie2: Update to 2.5.4	2024-05-24 06:33:53 -05:00
btllib
bwa
canu
cd-hit
cdbfasta
checkm
chip-seq
clustal-omega
clustalw
cufflinks
cytoscape	biology/cytoscape: Broken on i386	2024-05-25 18:45:24 -07:00
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta	biology/gcta: Unbreak build on 14.x aarch64	2024-05-28 16:26:06 -05:00
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib
iqtree	biology/iqtree: Update to 2.3.4	2024-05-16 13:08:07 -03:00
jalview
jellyfish
kallisto
kmcp
lamarc
libbigwig
libcombine
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
locarna
mafft
mapm3
mashmap
megahit
metaeuk	biology/metaeuk: update 6 → 7	2024-06-01 01:10:52 -07:00
migrate
minimap2	biology/minimap2: Unbreak build on aarch64	2024-05-28 16:06:42 -05:00
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig
py-bx-python
py-crossmap
py-cutadapt	biology/py-cutadapt: update to 4.8	2024-05-28 13:28:21 +02:00
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-htseq
py-libnuml
py-libsedml
py-loompy
py-macs2
py-macs3
py-mrcfile
py-multiqc
py-newick
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal	biology/py-pyrodigal: update 3.4.0 → 3.4.1	2024-05-26 10:51:27 -07:00
py-pysam
py-PySCeS	biology/py-PySCeS: update 1.1.1 → 1.2.1	2024-05-26 14:57:06 -07:00
py-python-libsbml
py-pywgsim	biology/py-pywgsim: unbreak bulk -a	2024-06-03 12:18:08 +00:00
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus
R-cran-Biobase
R-cran-BiocGenerics
R-cran-BiocManager
rainbow
rampler
readseq
rna-seq
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
salmon
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqkit	biology/seqkit: update 2.8.1 → 2.8.2	2024-05-18 09:52:19 -07:00
seqtk
seqwish	biology/seqwish: update 0.7.9 → 0.7.10	2024-05-18 10:29:58 -07:00
sigviewer
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks	biology/stacks: Unbreak build on aarch64	2024-05-28 16:17:25 -05:00
star
stringtie
subread
tabixpp
taxonkit
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer	biology/unikmer: Add PORTSCOUT line	2024-05-24 17:11:39 -07:00
vcf2hap
vcf-split
vcflib	biology/vcflib: add upstream reference for zig >= 0.11	2024-05-20 16:42:43 +02:00
vcftools
velvet
viennarna
vsearch
vt
wfa2-lib
wise
Makefile