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freebsd-ports/science
History
Ed Schouten 1a384c788d Remove USE_GCC. 
All versions of FreeBSD we support are shipped with at least GCC 4.2.1
or Clang. The code seems to build fine with Clang. In fact, on platforms
where we no longer ship libstdc++, this port seems to only build using
Clang.
2013-09-14 19:13:46 +00:00
..
2d-rewriter Convert to USES=imake 2013-06-28 22:25:57 +00:00
2dhf
abinit Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
afni Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
avogadro - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
bddsolve Remove USE_GCC. 2013-09-14 19:13:46 +00:00
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr - Convert to new perl framework 2013-08-03 13:44:00 +00:00
brian - Update to 1.4.1 2013-07-23 03:19:47 +00:00
buddy
cdcl Add an explicit dependency on pkgconf 2013-09-05 05:28:24 +00:00
cdf
cdo - Update to 1.6.1 2013-08-29 18:35:35 +00:00
cgnslib Downgrade to 3.1.4. 2013-07-10 13:40:57 +00:00
checkmol - worked with upstream to roll versioned source distfile 2013-06-01 05:10:39 +00:00
chemical-mime-data Add an explicit dependency on pkgconf 2013-09-02 22:23:53 +00:00
chemtool Add an explicit dependency on pkgconf 2013-09-06 13:01:53 +00:00
chemtool-devel Add an explicit dependency on pkgconf 2013-09-06 13:01:53 +00:00
clhep
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl Add an explicit dependency on pkgconf 2013-09-09 18:54:28 +00:00
devisor Convert NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:59:24 +00:00
dlpoly-classic Convert science to new options framework 2013-04-28 22:08:22 +00:00
dtiquery
ecs WITHOUT_NLS -> PORT_OPTIONS:MNLS 2013-06-04 14:40:29 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler Add an explicit dependency on pkgconf 2013-09-02 21:27:53 +00:00
fastcap - Tighten Makefile header and COMMENT 2013-07-28 09:46:15 +00:00
fasthenry update to 3.0wr-021113 2013-03-28 01:06:02 +00:00
felt - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
flounder - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
fvcom Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvcom-mpi Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data Add explicit dependency on pkgconf (27 ports) 2013-09-12 00:21:10 +00:00
gamess update to 2012/5/1 R2 version. 2013-03-05 11:43:18 +00:00
gchemutils Add explicit dependency on pkgconf (18 ports) 2013-09-12 09:07:08 +00:00
gdis Add an explicit dependency on pkgconf 2013-09-09 18:54:28 +00:00
getdp Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
ghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
ghmm
gnudatalanguage - do not use local bsd.python.mk variables within the port Makefile - switch 2013-08-30 16:49:43 +00:00
gramps gramps installs a .desktop file with a MimeType and registers Mime types 2013-06-24 22:02:02 +00:00
gromacs Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
gsmc Add an explicit dependency on pkgconf 2013-09-10 21:31:33 +00:00
gtamsanalyzer . portlint: remove whitespace before end of line; 2013-06-20 13:06:02 +00:00
gwyddion Add an explicit dependency on pkgconf 2013-09-02 22:58:16 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
hdf - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
hdf5 science/hdf5: Remove h5perf that is missing shared library 2013-07-22 18:17:31 +00:00
hdf5-18 - Update to 1.8.10 patch 1 2013-08-31 08:01:25 +00:00
hdf-java . remove shlib ABI version numbers from LIB_DEPENDS; 2013-06-20 13:25:04 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.6.3 2013-06-04 18:53:40 +00:00
InsightToolkit Readd specific EXAMPLES description because of specific comment in it 2013-04-29 05:39:52 +00:00
isaac-cfd . introduce optionsNG; 2013-06-20 16:19:43 +00:00
jmol - Use single space after WWW: 2013-09-07 17:20:21 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
kst2 Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
lamprop - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
libctl Update to 3.2.1 2013-09-03 17:05:11 +00:00
libghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
libint - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear Convert science to new options framework 2013-04-28 22:08:22 +00:00
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm Convert science to new options framework 2013-04-28 22:08:22 +00:00
libsvm-python
linsmith Add an explicit dependency on pkgconf 2013-09-03 12:13:23 +00:00
massxpert - Changed my email 2013-07-22 14:34:22 +00:00
mayavi . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 14:05:24 +00:00
mbdyn Convert science to new options framework 2013-04-28 22:08:22 +00:00
mcstas - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
medit Fix build with clang. 2013-06-12 20:03:25 +00:00
meep Update to 1.2 2013-09-03 17:06:48 +00:00
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 science/minc2: Switch license to BSD 2013-08-22 23:55:13 +00:00
mol2ps - Update to 0.4a 2013-07-22 15:28:03 +00:00
mpb . add license (GPLv2); 2013-06-20 13:35:33 +00:00
mpqc Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
mpqc-mpich
ncs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
netcdf Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf3-ftn - Cleanup Makefile header 2013-08-21 17:42:57 +00:00
netcdf4 - Add missing tab in USES=pathfix 2013-08-21 12:08:40 +00:00
netcdf-ftn - Cleanup Makefile header 2013-08-21 17:42:57 +00:00
nifticlib - Try to unbreak parallel builds (-jX) 2013-07-28 08:32:18 +00:00
omnetpp Convert USE_GNOME=pkgconfig to USES=pkgconfig 2013-08-31 00:12:37 +00:00
openbabel - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight - Use single space after WWW: 2013-08-29 04:08:53 +00:00
p5-Chemistry-3DBuilder - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Bond-Find - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Canonicalize - convert to the new perl5 framework 2013-09-10 09:39:11 +00:00
p5-Chemistry-Elements - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Chemistry-File-MDLMol - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-Mopac - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-PDB - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-SLN - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-SMARTS - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-SMILES - convert to the new perl5 framework 2013-09-10 07:55:33 +00:00
p5-Chemistry-File-VRML - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-File-XYZ - convert to the new perl5 framework 2013-09-10 09:39:11 +00:00
p5-Chemistry-FormulaPattern - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-InternalCoords - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Isotope - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-MacroMol - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Chemistry-MidasPattern - convert to the new perl5 framework 2013-09-10 09:39:11 +00:00
p5-Chemistry-Mok - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Mol - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-Chemistry-Pattern - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Reaction - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Chemistry-Ring - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Geo-BUFR - Update to 1.25 2013-09-14 07:19:23 +00:00
p5-Geo-Coordinates-Converter - Use single space after WWW: 2013-08-29 04:08:53 +00:00
p5-Geo-Coordinates-Converter-iArea - Cleanup Makefile header 2013-08-21 17:42:57 +00:00
p5-Geo-ReadGRIB - Convert to new perl framework 2013-08-06 08:50:49 +00:00
p5-Geo-WebService-Elevation-USGS - Convert to new perl framework 2013-08-02 18:52:07 +00:00
p5-PerlMol - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
p5-Physics-Unit - convert to the new perl5 framework 2013-09-10 08:26:53 +00:00
paje . portlint: use tab (not space) to make indentation; 2013-06-20 13:43:03 +00:00
paraview - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
peekabot Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes. 2013-08-17 16:27:24 +00:00
pnetcdf - Remove leading indefinite article from COMMENT 2013-08-21 17:17:25 +00:00
psi3 - Fix all cases of 'No newline at end of file' in ports tree 2013-02-01 15:04:00 +00:00
psychopy - Update to 1.77.00 2013-05-16 13:04:09 +00:00
py-coards Clean up. 2013-06-16 08:29:46 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py science/py-h5py: Add OPTION support for HDF5 1.8 2013-08-13 11:59:54 +00:00
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
py-netCDF4 - Update to 1.0.5 2013-08-21 02:49:33 +00:00
py-obspy - Update COMMENT and pkg-descr 2013-07-18 23:56:55 +00:00
py-paida - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
py-pupynere science/py-pupynere: Module for reading and writing NetCDF files [NEW PORT] 2013-09-02 11:27:42 +00:00
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn Update to version 0.13.1. 2013-03-11 14:11:26 +00:00
py-scimath - Update to 4.1.2 2013-07-23 04:27:27 +00:00
py-scipy - Take maintainership 2013-08-21 01:03:00 +00:00
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf
pynn - Update to 0.7.5 2013-03-02 05:49:40 +00:00
pyteomics - Update to 2.1.5 and [1]: 2013-05-11 07:42:20 +00:00
pyteomics.biolccc Allow to build with python3 2013-05-11 07:41:46 +00:00
qcl
qtresistors - Changed my email 2013-07-22 14:34:22 +00:00
R-cran-AMORE Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-bayesm Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-DCluster Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-e1071 Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-eco Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-Epi Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-epicalc Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-snow Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-som Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.2 2013-01-22 03:31:11 +00:00
ruby-netcdf - Use single space after WWW: 2013-08-29 04:10:37 +00:00
rubygem-ai4r - Reset maintainer after no response to mail since Jan 2013 2013-07-27 16:06:01 +00:00
silo - Remove MAKE_JOBS_SAFE variable 2013-08-14 22:35:50 +00:00
simlib
step Update math/gsl to 1.16 and adjust some dependent ports 2013-08-26 16:06:37 +00:00
svmlight
szip . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 13:01:27 +00:00
udunits - Convert to new LIB_DEPENDS format 2013-09-01 15:33:46 +00:00
v_sim Add explicit dependency on pkgconf (27 ports) 2013-09-12 00:21:10 +00:00
veusz - Update to 1.17.1 2013-06-19 13:53:12 +00:00
vmd - Remove bogus conditional IGNORE for PACKAGE_BUILDING; these should 2013-08-29 14:16:03 +00:00
voro++ - add new port: science/voro++ 2013-04-16 22:46:18 +00:00
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xfce4-equake-plugin - Update to 1.3.3 2013-09-11 15:04:45 +00:00
xmakemol Convert from USE_MOTIF to USES=motif 2013-07-10 07:00:44 +00:00
xmds Convert science to new options framework 2013-04-28 22:08:22 +00:00
Makefile science/py-pupynere: Module for reading and writing NetCDF files [NEW PORT] 2013-09-02 11:27:42 +00:00