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Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.
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9 lines
467 B
Plaintext
Bioawk is an extension to Brian Kernighan's awk, adding the support of several
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common biological data formats, including optionally gzip'ed BED, GFF, SAM,
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VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few
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built-in functions and an command line option to use TAB as the input/output
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delimiter. When the new functionality is not used, bioawk is intended to behave
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exactly the same as the original BWK awk.
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WWW: https://github.com/lh3/bioawk
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