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freebsd-ports/biology
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Sunpoet Po-Chuan Hsieh 20ee13c882 - Update to 2.40 
- Update *_DEPENDS for biology/p5-bioperl renaming
- Add NO_ARCH
- Sort PLIST

Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
2016-12-18 15:26:11 +00:00
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ariadne
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artemis
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avida
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babel
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bcftools
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bedtools
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biococoa
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biojava
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blat
biology/blat: Fix build on DF (taken from dports)
2016-12-18 04:46:53 +00:00
bowtie
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bowtie2
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bwa
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cd-hit
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cdbfasta
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chemeq
biology/chemeq: fix build on GCC (taken from dports)
2016-12-18 04:22:26 +00:00
clustalw
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consed
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crux
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diamond
biology/diamond: Update to version 0.8.29
2016-12-18 13:52:32 +00:00
emboss
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fasta
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fasta3
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fastdnaml
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fastool
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fasttree
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fastx-toolkit
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fluctuate
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garlic
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gff2ps
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gmap
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gperiodic
Remove libintl.so.9 compatibility link that was added in r374303 to
2016-12-08 19:52:19 +00:00
grappa
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hmmer
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htslib
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iolib
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jalview
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jellyfish
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lagan
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lamarc
biology/lamarc: Fix build on DF (taken from dports)
2016-12-18 04:34:33 +00:00
libgtextutils
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libsbml
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linux-foldingathome
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mafft
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mapm3
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migrate
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molden
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mopac
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mrbayes
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mummer
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muscle
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ncbi-blast+
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ncbi-toolkit
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njplot
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
- Add LICENSE
2016-12-18 15:25:13 +00:00
p5-Bio-Das
- Add LICENSE
2016-12-18 15:25:18 +00:00
p5-Bio-Das-Lite
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
- Update to 2.40
2016-12-18 15:26:11 +00:00
p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
- Add LICENSE_FILE
2016-12-18 15:25:22 +00:00
p5-Bio-SCF
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p5-BioPerl
- Move biology/p5-bioperl to biology/p5-BioPerl
2016-12-18 15:25:04 +00:00
p5-BioPerl-Run
- Move biology/p5-bioperl-run to biology/p5-BioPerl-Run
2016-12-18 15:25:44 +00:00
p5-transdecoder
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paml
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phrap
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phred
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phylip
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phyml
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plink
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plinkseq
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primer3
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protomol
biology/protomol: Support build with C++11 (taken from dports)
2016-12-18 05:34:42 +00:00
psi88
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py-biom-format
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py-biopython
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pycogent
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pyfasta
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python-nexus
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recombine
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ruby-bio
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samtools
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seaview
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seqan
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seqan1
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seqan-apps
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seqio
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seqtools
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sim4
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slclust
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ssaha
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t_coffee
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tinker
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treepuzzle
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treeviewx
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trimmomatic
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tRNAscan-SE
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ugene
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vcftools
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velvet
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wise
Remove libintl.so.9 compatibility link that was added in r374303 to
2016-12-08 19:52:19 +00:00
xmolwt
Remove libintl.so.9 compatibility link that was added in r374303 to
2016-12-08 19:52:19 +00:00
Makefile
- Move biology/p5-bioperl-run to biology/p5-BioPerl-Run
2016-12-18 15:25:44 +00:00