Yuri Victorovich adcc89e61e science/highfiv: Update 2.2 -> 2.2.1 ... Reported by: portscout		2020-04-29 07:05:09 +00:00
..
2d-rewriter	science/2d-rewriter:	2020-03-29 05:55:51 +00:00
abinit	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
afni	science/afni: update to 20.1.03	2020-04-29 06:55:48 +00:00
agrum	science/agrum: Update 0.17.1 -> 0.17.2	2020-03-24 03:31:42 +00:00
aircraft-datcom	audio/festvox-cmu_us_slt_arctic, games/flightgear-terragear, graphics/zathura-cb, graphics/zathura-pdf-poppler, graphics/zathura-ps, math/nfft, net/py-mpi4py, science/aircraft-datcom, x11-themes/gnome-icons-luv: reset MAINTAINER	2020-03-02 17:35:42 +00:00
ALPSCore	- Swap back from net/openmpi3 to net/openmpi	2020-04-21 21:26:56 +00:00
antioch	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
apbs
atom	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
atompaw	atompaw is actually fetchable	2020-01-05 11:52:46 +00:00
avogadro2	science/avogadro2: Update 1.91.0 -> 1.93.0	2020-02-06 07:09:42 +00:00
avogadrolibs	science/avogadrolibs: Remove a broken option VTK set to default by mistake	2020-04-27 16:09:56 +00:00
bagel	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
bddsolve	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
berkeleygw	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
bodr
brian	Deprecate some ports using deprecated version of python	2020-03-08 17:01:46 +00:00
buddy
cdcl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
cdf
cdk	New port: science/cdk: Chemistry Development Kit	2020-01-09 16:48:21 +00:00
cdo	Update jasper to 2.0.16	2019-12-27 13:43:00 +00:00
cgnslib	Upgrade to v4.1.1.	2020-03-17 11:01:17 +00:00
cgribex	Update jasper to 2.0.16	2019-12-27 13:43:00 +00:00
checkmol	- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems	2020-03-06 06:26:05 +00:00
chemical-mime-data	print, science: Add missing USES=gnome	2019-11-08 13:22:59 +00:00
chemps2	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
chemtool	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
chemtool-devel	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
chrono	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
clhep
clipper
code_saturne	Upgrade to 6.1.0 + some post-release fixes.	2020-04-26 17:59:16 +00:00
colt	Clean up after java/openjdk6 and java/openjdk6-jre removal	2019-11-26 21:46:12 +00:00
coordgenlibs	science/coordgenlibs: Update 1.3.2 -> 1.4.0	2020-03-17 07:32:33 +00:00
cp2k	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
cp2k-data
crf++
dalton	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
datawarrior	Deprecate java/openjfx8-devel consumers	2020-03-19 09:33:13 +00:00
dcl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
devisor	Clean up after java/openjdk6 and java/openjdk6-jre removal	2019-11-26 21:46:12 +00:00
dftbplus	Deprecate a few ports	2020-02-23 15:25:53 +00:00
dkh
dlib-cpp	science/dlib-cpp and science/py-dlib: Update to 19.19.	2020-02-12 17:28:11 +00:00
dlpoly-classic	science/dlpoly-classic: Change dependency to openmpi3	2020-04-12 14:31:17 +00:00
drawxtl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
dvc	Deprecate a few ports	2020-02-23 15:25:53 +00:00
eccodes	Update to 2.17.0	2020-03-28 12:46:34 +00:00
elk
elmerfem	science/elmerfem fix build ahead of CMake 3.17.	2020-04-04 18:11:46 +00:00
epte
erd
erkale	science/erkale: Update g20200319 -> g20200416	2020-04-17 19:00:38 +00:00
erkale-pseudopotentials
esys-particle	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
fastcap
fasthenry
fisicalab	Return theraven's ports to the pool after safekeeping his commit bit.	2020-03-05 20:49:05 +00:00
fleur	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
fsom
fvcom	Bump PORTREVISION for science/netcdf-fortran shlib change	2019-08-31 17:11:57 +00:00
fvcom-mpi	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
gabedit	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
gamess-us	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
gchemutils	Remove textproc/gnome-doc-utils.	2020-01-27 19:40:17 +00:00
gdma
getdp	- Update to 3.3.0.	2019-12-22 02:28:57 +00:00
ghemical	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
ghmm	print, science: Add missing USES=gnome	2019-11-08 13:22:59 +00:00
gnudatalanguage	There is a bug with GraphicsMagick: see	2019-11-23 18:05:22 +00:00
gpaw-setups
gramps	Convert the tree to use PY_PILLOW	2020-03-24 19:54:57 +00:00
grib_api
gromacs	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
gsmc	print, science: Add missing USES=gnome	2019-11-08 13:22:59 +00:00
gtamsanalyzer
h5utils
h5z-zfp
harminv	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
hdf
hdf5	Revert r529778, ports depending on it were not tested	2020-03-29 20:41:45 +00:00
hdf5-18
healpix
highfive	science/highfiv: Update 2.2 -> 2.2.1	2020-04-29 07:05:09 +00:00
hypre	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
iboview	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
InsightToolkit	- Update devel/gdcm to 3.0.5.	2020-02-22 23:28:41 +00:00
isaac-cfd
jdftx	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
jmol	science/jmol: Update 14.30.1 -> 14.30.2 and unbreak	2020-02-01 03:32:16 +00:00
jstrack	Update to version 3.4.0, which includes updated documentation, links to	2019-10-02 16:14:46 +00:00
kalzium	Update KDE Applications (release-service) to 20.04	2020-04-23 17:00:52 +00:00
kim-api
kst2	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
lammps	science/lammps: Update 19Mar2020 -> 15Apr2020	2020-04-20 04:38:13 +00:00
lamprop
latte	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
libaec
libccp4
libcint	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
libctl
libefp
libgeodecomp	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
libghemical	Pet portlint (trailing whitespace).	2019-11-08 03:23:25 +00:00
libgridxc
libint
libint2	science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0	2020-01-13 02:54:47 +00:00
libkml	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
liblinear
libmsym
liboglappth	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts	science/liggghts: Remove the unnecessary VTK_DIR	2020-04-27 16:26:42 +00:00
lm	Bump PORTREVISION for devel/protobuf shlib change	2020-01-22 05:53:20 +00:00
luscus	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
madness	Update devel/tbb to 2020.2 and bump dependent port's revisions	2020-04-01 14:14:51 +00:00
maeparser	science/maeparser: Update 1.2.2 -> 1.2.3	2020-03-17 07:19:57 +00:00
massxpert	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
mbdyn	science/mbdyn: use math/metis instead of expired math/metis4 for METIS option	2020-02-22 18:53:40 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit	Unbreak medit.	2019-11-20 20:40:53 +00:00
metaphysicl	science/metaphysicl: 0.5.2 -> 0.6.0	2019-10-13 21:17:17 +00:00
minc2
mmdb2	science/mmdb2: Update 2.0.19 -> 2.0.20	2020-01-13 03:30:45 +00:00
mmtf-cpp
mol2ps	- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems	2020-03-06 06:26:05 +00:00
molgif	Bump PORTREVISION after r517743 to force relinking.	2019-11-16 12:52:39 +00:00
molscript	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
molsketch
mpb
mpqc	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
msms
multiwfn	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
namd
nest	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
netcdf	Update to 4.7.3	2019-12-08 16:52:27 +00:00
netcdf-cxx	Update to 4.3.1	2019-09-12 19:06:48 +00:00
netcdf-fortran	Update to 4.5.2	2019-09-26 18:13:09 +00:00
nifticlib
nwchem	science/nwchem: Update 6.8.1.20190820 -> 7.0.0-beta1	2019-11-23 17:44:06 +00:00
nwchem-data
octopus	science/octopus: Update 8.4 -> 9.2	2020-04-05 01:17:39 +00:00
openbabel
openkim
openkim-models
openmx	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
opensim-core	science/opensim-core: Update 4.0-601 -> 4.1	2020-02-04 07:01:58 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter	Add NO_ARCH	2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea	Cosmetic change	2020-04-21 19:37:40 +00:00
p5-Geo-ReadGRIB	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
p5-Geo-WebService-Elevation-USGS	- Update to 0.117	2020-04-18 08:35:03 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol	science/packmol: Pack molecules in defined regions of space	2019-09-22 19:06:43 +00:00
pagmo2	Update devel/tbb to 2020.2 and bump dependent port's revisions	2020-04-01 14:14:51 +00:00
paje
paraview	Deprecate some ports using deprecated version of python	2020-03-08 17:01:46 +00:00
pcmsolver	science/pcmsolver: fix build on GCC architectures	2019-10-27 19:19:07 +00:00
PETSc	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
pnetcdf	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
pulseview	science/pulseview: Update to version 0.4.2	2020-04-26 19:22:39 +00:00
py-abipy	science/py-abipy: Unbreak	2020-03-31 05:50:30 +00:00
py-asdf	Update to 2.6.0	2020-04-24 18:03:39 +00:00
py-ase	science/py-ase: Update 3.19.0 -> 3.19.1	2020-04-04 07:30:04 +00:00
py-avogadrolibs	science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0	2020-02-06 07:17:20 +00:00
py-cdo
py-chainer	science/py-chainer: Update 7.1.0 -> 7.2.0	2020-02-15 03:59:09 +00:00
py-chainer-chemistry	science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0	2019-12-22 03:10:17 +00:00
py-chempy	science/py-chempy: Update 0.7.9 -> 0.7.10	2020-03-07 20:47:22 +00:00
py-coards
py-DendroPy
py-dlib	science/dlib-cpp and science/py-dlib: Update to 19.19.	2020-02-12 17:28:11 +00:00
py-eccodes-python	Update to 0.9.5	2020-01-17 16:40:13 +00:00
py-geolinks	Add py-geolinks 0.2.0	2020-01-18 18:23:32 +00:00
py-geomet	Add py-geomet 0.2.1	2019-12-29 12:46:17 +00:00
py-geometer	Update to 0.2.2	2020-02-17 19:43:41 +00:00
py-gpaw	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
py-GPy	science/py-GPy: Change to USES=python because it builds fine with python-3.7	2020-04-08 06:35:03 +00:00
py-GPyOpt	science/py-GPyOpt: Update 1.2.5 -> 1.2.6	2020-04-08 06:39:07 +00:00
py-gsd	science/py-gsd: Update 1.9.3 -> 1.10.0	2020-01-03 03:58:46 +00:00
py-h5json	New port: science/py-h5json: Tools and library for representing HDF5 in JSON	2020-01-26 10:07:36 +00:00
py-h5py	Update to 2.10.0	2019-09-07 22:44:39 +00:00
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-mmtf-python
py-molmod	science/py-molmod: Update 1.4.4 -> 1.4.5	2019-10-12 16:44:38 +00:00
py-netCDF4
py-obspy	- Update to 1.2.1	2020-03-12 03:58:15 +00:00
py-oddt	science/py-oddt: Update 0.6 -> 0.7	2019-12-27 05:12:21 +00:00
py-OpenFermion	science/py-OpenFermion: Update 0.10.0 -> 0.11.0	2020-04-07 21:49:28 +00:00
py-openpiv
py-paida
py-paramz
py-phono3py	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pycsw	Add py-pycsw 2.4.2	2020-01-18 18:23:39 +00:00
py-pydicom	- Update to 1.4.2	2020-04-22 08:01:18 +00:00
py-PyFR	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-pygeodesy
py-pygeometa	Add py-pygeometa 0.5.0	2020-01-18 18:23:44 +00:00
py-pymatgen	science/py-pymatgen: fix build on GCC architectures	2020-01-23 10:44:41 +00:00
py-pymol	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-pyosf
py-PyQuante	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-pysal
py-pyteomics	Update to 4.2	2020-03-01 06:49:00 +00:00
py-qcelemental	science/py-qcelemental: Update 0.11.0 -> 0.12.0	2020-01-12 21:07:37 +00:00
py-qcengine
py-qspin
py-quantities	science/py-quantities: Update 0.12.3 -> 0.12.4	2020-01-12 07:24:33 +00:00
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-scikit-learn	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-scikit-optimize	Add PLOTS option	2020-04-22 21:28:17 +00:00
py-scikit-sparse
py-scimath
py-scipy	Revert r524969 and unbreak bulk -a	2020-02-02 16:40:43 +00:00
py-scoria	science/py-scoria: Update 1.0.4 -> 1.0.5	2020-03-28 04:04:51 +00:00
py-SimpleSpectral
py-spglib
py-tensorflow	devel/icu: update to 67.1	2020-04-23 20:14:49 +00:00
py-tensorflow-estimator	Deprecate ports broken for more than 6 months	2020-04-04 20:51:40 +00:00
py-veusz	Update py-sip to 4.19.21 and qscintilla2 to 2.11.4	2020-04-11 05:04:40 +00:00
py-ws2300	Deprecate a few ports	2020-02-23 15:25:53 +00:00
pybrain
pynn	- Update to 0.9.5	2020-02-22 15:05:40 +00:00
qbox	science/qbox: Update 1.68.3 -> 1.68.4	2020-04-11 18:29:19 +00:00
qcl
qiskit-aer	science/qiskit-aer: Update 0.5.0 -> 0.5.1	2020-04-25 08:16:04 +00:00
qmcpack	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
quantum-espresso	science/quantum-espresso: Update 6.4.1 -> 6.5	2019-12-31 19:32:59 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm	- Update to 3.1.4	2019-11-29 23:26:04 +00:00
R-cran-cmprsk	- Update to 2.2-9	2019-10-11 09:12:52 +00:00
R-cran-DCluster
R-cran-e1071	- Update to 1.7-3	2019-11-28 14:43:13 +00:00
R-cran-eco
R-cran-Epi	- Update to 2.40	2019-11-28 00:12:45 +00:00
R-cran-epicalc
R-cran-etm	- Update to 1.1	2020-04-22 13:00:02 +00:00
R-cran-FAdist	Uograde to 2.3.	2020-04-17 20:23:48 +00:00
R-cran-fastICA	Return dbn's ports to the pool after safekeeping his commit bit.	2020-02-03 20:21:08 +00:00
R-cran-kernlab	- Update to 0.9-29	2019-11-14 22:29:41 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	Convert the tree to use PY_PILLOW	2020-03-24 19:54:57 +00:00
rmf	Fix build with hdf5 1.10.6	2020-01-01 16:31:57 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson	Cosmetic change	2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
scidavis	math/gsl: update to 2.6	2019-10-25 23:41:34 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw	science/sigrok-firmware-fx2lafw: Update to version 0.1.7	2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
silo
simbody	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
simgrid	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
simint
simlib
simsmith	Clean up after java/openjdk6 and java/openjdk6-jre removal	2019-11-26 21:46:12 +00:00
smoldyn	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
sparta	- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)	2020-04-19 09:49:02 +00:00
spglib
step	Update KDE Applications (release-service) to 20.04	2020-04-23 17:00:52 +00:00
svmlight
szip
teem
tfel	science/tfel: update to version 3.3	2019-12-21 19:53:14 +00:00
tinker	science/tinker: Update 8.7.1 -> 8.7.2	2019-11-29 07:44:51 +00:00
udunits
v_sim	Make fetchable again.	2019-11-19 21:38:47 +00:00
vipster	science/vipster: Limit the version format to prevent portscout reporting odd revisions	2020-01-12 20:12:43 +00:00
vmd	Return dbn's ports to the pool after safekeeping his commit bit.	2020-02-03 20:21:08 +00:00
voro++
wannier90	science/wannier90: Update 3.0.0 -> 3.1.0	2020-03-08 02:34:49 +00:00
wwplot	science/wwplot: Update 0.0.7 -> 0.0.8	2020-01-25 17:53:30 +00:00
wxmacmolplt
xcrysden	Add USES=xorg USES=gl, ports categories s	2019-11-07 17:17:53 +00:00
xdrawchem
xfce4-equake-plugin	science/xfce4-equake-plugin: fix build on GCC architectures	2019-10-02 14:02:33 +00:00
yoda	science/yoda: Update 1.7.7 -> 1.8.0	2020-01-19 09:06:26 +00:00
Makefile	Add py-scikit-optimize 0.7.4	2020-04-21 19:33:11 +00:00