Dmitry Marakasov 30a00f2227 Most commonly used build systems support silent builds, when they ... hide actual commands executed and only show short summary line (like "CC foo.c"). CMake and ninja enable this by default, some autotools using ports do as well. This is unacceptable because we need complete build logs at any time, so we now switch to verbose build logs unconditionally. Note that this change deliberately affects ALL builds and not only package builds on cluster, because we need to be sure that user experiencing failure can always provide informative build log regardless of settings and without rerunning the build. Change summary: - Always do verbose builds for cmake, ninja and GNU configure (the latter includes check if --disable-silent-rules is actually supported by the configure script; there are isolated cases when it's not true) - Remove CMAKE_VERBOSE, NINJA_VERBOSE and CONFIGURE_ARGS=--disable-silent-rules from all ports which set them for this is no longer needed - Revert hacks for --disable-silent-rules support priorly committed to biology/ncbi-blast+ and net-p2p/mldonkey - no longer needed as well Submitted by: amdmi3 Reviewed by: mat Exp-run by: antoine Approved by: portmgr (mat, antoine) Differential Revision: D7534		2016-09-09 19:42:46 +00:00
..
ariadne	Cleanup $() variables in ports Makefiles.	2016-07-20 15:33:20 +00:00
artemis	- Add empty directory to plist	2015-03-11 14:41:53 +00:00
avida	mark some of the ports that don't build on powerpc64 for me	2015-12-13 16:07:27 +00:00
babel	Unbreak the build on PowerPC (at least) by always using va_copy() macro for	2015-09-02 10:10:06 +00:00
bcftools	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
bedtools	biology/bedtools is not jobs safe	2016-08-22 04:32:18 +00:00
biococoa	Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.	2015-09-19 10:33:34 +00:00
biojava	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
blat	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
bowtie	New port: biology/bowtie.	2016-03-05 13:21:26 +00:00
bowtie2	biology/bowtie2: 2.2.7 -> 2.2.8	2016-05-13 20:12:44 +00:00
bwa	mark some of the ports that don't build on powerpc64 for me	2015-12-13 16:07:27 +00:00
cd-hit	- Update maintainer mail address	2015-12-11 08:48:56 +00:00
cdbfasta	- Update maintainer mail address	2015-12-11 08:48:56 +00:00
chemeq	- Add LICENSE	2016-04-10 11:24:32 +00:00
clustalw	Remove useless WRKSRC definitions.	2016-05-25 15:43:34 +00:00
consed	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
crux	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
diamond	- Update to 0.8.20	2016-09-06 06:34:59 +00:00
emboss	- update libgd to 2.2.2	2016-07-20 09:33:31 +00:00
fasta	- Do not falsely advertise that PowerPC build runs out of space and fails	2015-09-02 10:35:25 +00:00
fasta3	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
fastdnaml	Convert LICENSE= "GPLxx # or later" to "GPLxx+"	2016-01-12 16:20:31 +00:00
fastool	- Update maintainer mail address	2015-12-11 08:48:56 +00:00
fasttree	- Update maintainer mail address	2015-12-11 08:48:56 +00:00
fastx-toolkit	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
fluctuate	- Switch to options helpers	2015-11-19 00:51:15 +00:00
garlic	Cleanup plist	2014-10-20 07:10:48 +00:00
gff2ps	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
gmap	mark some of the ports that don't build on powerpc64 for me	2015-12-13 16:07:27 +00:00
gperiodic	- LICENSE	2016-07-02 09:05:22 +00:00
grappa	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
hmmer	- Update maintainer mail address	2015-12-11 08:48:56 +00:00
htslib	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
iolib	- Update to 1.14.8	2016-05-01 01:03:48 +00:00
jalview	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
jellyfish	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
lagan	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
lamarc	- Switch to options helpers	2016-08-18 09:31:58 +00:00
libgtextutils	Cleanup GH_* and variables order.	2015-12-29 14:30:46 +00:00
libsbml	Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:	2016-04-16 01:54:15 +00:00
linux-foldingathome	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
mafft	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
mapm3	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
migrate	- Switch to options helpers	2016-04-17 10:15:59 +00:00
molden	biology/molden: 5.4 -> 5.7	2016-08-26 06:00:47 +00:00
mopac	Convert LICENSE= "GPLxx # or later" to "GPLxx+"	2016-01-12 16:20:31 +00:00
mrbayes	Fix build on -current by un-clobbering LDFLAGS. Also, don't	2014-08-15 16:37:37 +00:00
mummer	Fix build on mips by properly respecting compiler and flags	2015-08-05 12:18:41 +00:00
muscle	mark some of the ports that don't build on powerpc64 for me	2015-12-13 16:07:27 +00:00
ncbi-blast+	Most commonly used build systems support silent builds, when they	2016-09-09 19:42:46 +00:00
ncbi-toolkit	- Add missing dependency, fixing build	2016-06-24 09:04:45 +00:00
p5-AcePerl	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-ASN1-EntrezGene	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-Das	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-Das-Lite	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-GFF3	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-Glite	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-Graphics	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-MAGETAB	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-Bio-NEXUS	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-Phylo	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-SCF	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-bioperl	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-bioperl-run	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
p5-transdecoder	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
paml	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
phrap	- Fix various distinfo errors	2014-10-16 08:55:30 +00:00
phred	update ports:	2014-08-23 18:04:58 +00:00
phylip	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
phyml	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
plink	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
plinkseq	many ports: mark broken on powerpc64	2016-04-21 16:43:14 +00:00
primer3
protomol	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
psi88	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
py-biom-format	- Fix run-time dependency issues	2016-06-11 09:25:04 +00:00
py-biopython	- Update to 1.66	2016-04-17 03:55:01 +00:00
pycogent	- Update to 1.9 [1]	2016-08-08 11:21:04 +00:00
pyfasta	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
python-nexus	- Update to 1.35	2016-06-08 07:39:05 +00:00
recombine	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
ruby-bio	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
samtools	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
seaview	biology/seaview: Update version 4.5.4.8=>4.6	2016-06-10 11:06:42 +00:00
seqan	- Do install cmake and pkgconfig modules	2016-05-27 16:10:36 +00:00
seqan1	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
seqan-apps	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
seqio
seqtools	biology/seqtools: 4.42.1 -> 4.43.0	2016-07-31 14:19:09 +00:00
sim4
slclust	Remove unneeded usage of:	2016-06-06 15:25:42 +00:00
ssaha	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
t_coffee	Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.	2016-04-01 13:29:15 +00:00
tinker	Convert ports to use the options helpers in categories [abc]*, and minor fixes.	2015-08-19 13:29:59 +00:00
treepuzzle
treeviewx	Convert LICENSE= "GPLxx # or later" to "GPLxx+"	2016-01-12 16:20:31 +00:00
trimmomatic	Trimmomatic performs a variety of useful trimming tasks for illumina	2016-03-17 08:21:14 +00:00
tRNAscan-SE	Prevent collision with getline(3)	2016-05-13 18:38:34 +00:00
ugene	During the exp-run in bug 208158, it was found that biology/ugene gives	2016-05-07 19:38:53 +00:00
vcftools	New port: biology/vcftools.	2016-02-26 17:07:59 +00:00
velvet	Designatate 4 ports as unsafe for parallel building	2015-01-19 17:43:57 +00:00
wise	- Switch to options helpers	2016-06-21 09:05:06 +00:00
xmolwt	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
Makefile	Remove expired ports without open PRs:	2016-07-04 20:48:23 +00:00