mirror of
https://git.FreeBSD.org/ports.git
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1c60fe9d1f
- apply DATADIR, EXAMPLESDIR, and DOCSDIR in PLIST - update the usage of NOPORTDOCS PR: 71322 Submitted by: leeym Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar>
1115 lines
43 KiB
Plaintext
1115 lines
43 KiB
Plaintext
bin/bp_chaos_plot.pl
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bin/bp_composite_LD.pl
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bin/bp_pairwise_kaks.pl
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bin/bp_flanks.pl
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bin/bp_translate_seq.pl
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bin/bp_feature_draw.pl
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bin/bp_load_gff.pl
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bin/bp_biblio.pl
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bin/bp_fast_load_gff.pl
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bin/bp_search_overview.pl
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bin/bp_search2tribe.pl
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bin/bp_fetch.pl
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bin/bp_seq_length.pl
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bin/bp_search2gff.pl
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bin/bp_extract_feature_seq.pl
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bin/bp_pg_bulk_load_gff.pl
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bin/bp_sreformat.pl
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bin/bp_index.pl
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bin/bp_dbsplit.pl
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bin/bp_biofetch_genbank_proxy.pl
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bin/bp_bioflat_index.pl
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bin/bp_search2alnblocks.pl
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bin/bp_local_taxonomydb_query.pl
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bin/bp_biogetseq.pl
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bin/bp_process_wormbase.pl
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bin/bp_search2BSML.pl
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bin/bp_taxid4species.pl
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bin/bp_mask_by_search.pl
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bin/bp_mrtrans.pl
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bin/bp_process_gadfly.pl
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bin/bp_gccalc.pl
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bin/bp_seqconvert.pl
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bin/bp_oligo_count.pl
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bin/bp_process_ncbi_human.pl
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bin/bp_split_seq.pl
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bin/bp_remote_blast.pl
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bin/bp_aacomp.pl
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bin/bp_heterogeneity_test.pl
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bin/bp_frend.pl
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bin/bp_generate_histogram.pl
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bin/bp_process_sgd.pl
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bin/bp_mutate.pl
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bin/bp_filter_search.pl
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bin/bp_genbank2gff.pl
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bin/bp_bulk_load_gff.pl
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bin/bp_nrdb.pl
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bin/bp_blast2tree.pl
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%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/.packlist
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%%SITE_PERL%%/bptutorial.pl
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%%SITE_PERL%%/Bio/Index/Fasta.pm
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%%SITE_PERL%%/Bio/Index/SwissPfam.pm
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%%SITE_PERL%%/Bio/Index/Fastq.pm
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%%SITE_PERL%%/Bio/Index/Blast.pm
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%%SITE_PERL%%/Bio/Symbol/ProteinAlphabet.pm
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%%SITE_PERL%%/Bio/Symbol/Alphabet.pm
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%%DATADIR%%/models/bio_liveseq_variation.dia
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%%DATADIR%%/models/bio_map.dia
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%%DATADIR%%/models/bio_restriction.dia
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%%DATADIR%%/models/bioperl.dia
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%%DATADIR%%/models/coordinatemapper.dia
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%%DATADIR%%/models/map_proposal.txt
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%%DATADIR%%/models/maps_and_markers.dia
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%%DATADIR%%/models/popgen.dia
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%%DATADIR%%/models/biblio.dia
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@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
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@dirrm %%SITE_PERL%%/Bio/Das
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@dirrm %%SITE_PERL%%/Bio/MapIO
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@dirrm %%SITE_PERL%%/Bio/Expression/FeatureSet
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@dirrm %%SITE_PERL%%/Bio/Expression/FeatureGroup
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@dirrm %%SITE_PERL%%/Bio/Expression
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@dirrm %%SITE_PERL%%/Bio/Align
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@dirrm %%SITE_PERL%%/Bio/TreeIO
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@dirrm %%SITE_PERL%%/Bio/AlignIO
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@dirrm %%SITE_PERL%%/Bio/Index
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@dirrm %%SITE_PERL%%/Bio/Symbol
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@dirrm %%SITE_PERL%%/Bio/Ontology
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@dirrm %%SITE_PERL%%/Bio/Phenotype/OMIM
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@dirrm %%SITE_PERL%%/Bio/Phenotype/MeSH
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@dirrm %%SITE_PERL%%/Bio/Phenotype
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@dirrm %%SITE_PERL%%/Bio/ClusterIO
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@dirrm %%SITE_PERL%%/Bio/PopGen/Simulation
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@dirrm %%SITE_PERL%%/Bio/PopGen/IO
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@dirrm %%SITE_PERL%%/Bio/PopGen
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@dirrm %%SITE_PERL%%/Bio/SeqFeature/SiRNA
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@dirrm %%SITE_PERL%%/Bio/SeqFeature/Gene
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@dirrm %%SITE_PERL%%/Bio/SeqFeature/Tools
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@dirrm %%SITE_PERL%%/Bio/SeqFeature
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@dirrm %%SITE_PERL%%/Bio/Cluster
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@dirrm %%SITE_PERL%%/Bio/Seq/Meta
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@dirrm %%SITE_PERL%%/Bio/Seq
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@dirrm %%SITE_PERL%%/Bio/CodonUsage
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@dirrm %%SITE_PERL%%/Bio/Annotation
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@dirrm %%SITE_PERL%%/Bio/Coordinate/Result
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@dirrm %%SITE_PERL%%/Bio/Coordinate
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@dirrm %%SITE_PERL%%/Bio/Matrix/IO
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@dirrm %%SITE_PERL%%/Bio/Matrix/PSM/IO
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@dirrm %%SITE_PERL%%/Bio/Matrix/PSM
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@dirrm %%SITE_PERL%%/Bio/Matrix
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@dirrm %%SITE_PERL%%/Bio/Tree
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@dirrm %%SITE_PERL%%/Bio/Structure/IO
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@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/DSSP
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@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/STRIDE
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@dirrm %%SITE_PERL%%/Bio/Structure/SecStr
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@dirrm %%SITE_PERL%%/Bio/Structure
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@dirrm %%SITE_PERL%%/Bio/Assembly/IO
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@dirrm %%SITE_PERL%%/Bio/Assembly
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@dirrm %%SITE_PERL%%/Bio/Map
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@dirrm %%SITE_PERL%%/Bio/Restriction/Enzyme
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@dirrm %%SITE_PERL%%/Bio/Restriction/IO
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@dirrm %%SITE_PERL%%/Bio/Restriction
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@dirrm %%SITE_PERL%%/Bio/LiveSeq/IO
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@dirrm %%SITE_PERL%%/Bio/LiveSeq
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@dirrm %%SITE_PERL%%/Bio/Root
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@dirrm %%SITE_PERL%%/Bio/Search/Result
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@dirrm %%SITE_PERL%%/Bio/Search/Iteration
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@dirrm %%SITE_PERL%%/Bio/Search/HSP
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@dirrm %%SITE_PERL%%/Bio/Search/Hit
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@dirrm %%SITE_PERL%%/Bio/Search
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@dirrm %%SITE_PERL%%/Bio/Event
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@dirrm %%SITE_PERL%%/Bio/SearchIO/Writer
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@dirrm %%SITE_PERL%%/Bio/SearchIO
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@dirrm %%SITE_PERL%%/Bio/Factory
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@dirrm %%SITE_PERL%%/Bio/Variation/IO
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@dirrm %%SITE_PERL%%/Bio/Variation
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@dirrm %%SITE_PERL%%/Bio/Tools/Run
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@dirrm %%SITE_PERL%%/Bio/Tools/EMBOSS
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@dirrm %%SITE_PERL%%/Bio/Tools/Primer/Assessor
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@dirrm %%SITE_PERL%%/Bio/Tools/Primer
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@dirrm %%SITE_PERL%%/Bio/Tools/Alignment
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@dirrm %%SITE_PERL%%/Bio/Tools/Blast
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@dirrm %%SITE_PERL%%/Bio/Tools/Prediction
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@dirrm %%SITE_PERL%%/Bio/Tools/Sim4
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@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Phylip
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@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Molphy
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@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/PAML
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@dirrm %%SITE_PERL%%/Bio/Tools/Phylo
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@dirrm %%SITE_PERL%%/Bio/Tools/BPlite
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@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/DNA
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@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/Protein
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@dirrm %%SITE_PERL%%/Bio/Tools/Analysis
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@dirrm %%SITE_PERL%%/Bio/Tools/HMMER
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@dirrm %%SITE_PERL%%/Bio/Tools
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@dirrm %%SITE_PERL%%/Bio/Graphics/FeatureFile
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@dirrm %%SITE_PERL%%/Bio/Graphics/Glyph
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@dirrm %%SITE_PERL%%/Bio/Graphics
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@dirrm %%SITE_PERL%%/Bio/Taxonomy
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@dirrm %%SITE_PERL%%/Bio/DB/Biblio
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@dirrm %%SITE_PERL%%/Bio/DB/Query
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@dirrm %%SITE_PERL%%/Bio/DB/Taxonomy
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@dirrm %%SITE_PERL%%/Bio/DB/Flat/BDB
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@dirrm %%SITE_PERL%%/Bio/DB/Flat
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@dirrm %%SITE_PERL%%/Bio/DB/GFF/Util
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@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/dbi
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@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor
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@dirrm %%SITE_PERL%%/Bio/DB/GFF/Aggregator
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@dirrm %%SITE_PERL%%/Bio/DB/GFF
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@dirrm %%SITE_PERL%%/Bio/DB
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@dirrm %%SITE_PERL%%/Bio/Biblio/IO
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@dirrm %%SITE_PERL%%/Bio/Biblio
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@dirrm %%SITE_PERL%%/Bio/OntologyIO/Handlers
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@dirrm %%SITE_PERL%%/Bio/OntologyIO
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@dirrm %%SITE_PERL%%/Bio/Location
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@dirrm %%SITE_PERL%%/Bio/SeqIO/game
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@dirrm %%SITE_PERL%%/Bio/SeqIO
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@dirrm %%SITE_PERL%%/Bio
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/faq
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/examples/graphics
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/examples
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/figs/graphics
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/figs
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/html/images
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/html
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/pdf
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/sgml
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto/txt
|
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/howto
|
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%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc
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%%PORTDOCS%%@dirrm %%DOCSDIR%%
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@dirrm %%EXAMPLESDIR%%/align
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@dirrm %%EXAMPLESDIR%%/tools
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@dirrm %%EXAMPLESDIR%%/tk
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@dirrm %%EXAMPLESDIR%%/tree
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@dirrm %%EXAMPLESDIR%%/sirna
|
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@dirrm %%EXAMPLESDIR%%/searchio
|
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@dirrm %%EXAMPLESDIR%%/root/lib/Bio
|
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@dirrm %%EXAMPLESDIR%%/root/lib
|
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@dirrm %%EXAMPLESDIR%%/root
|
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@dirrm %%EXAMPLESDIR%%/db
|
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@dirrm %%EXAMPLESDIR%%/biblio
|
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@dirrm %%EXAMPLESDIR%%/popgen
|
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@dirrm %%EXAMPLESDIR%%/biographics
|
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@dirrm %%EXAMPLESDIR%%/cluster
|
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@dirrm %%EXAMPLESDIR%%/contributed
|
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@dirrm %%EXAMPLESDIR%%/liveseq
|
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@dirrm %%EXAMPLESDIR%%/Bio-DB-GFF
|
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@dirrm %%EXAMPLESDIR%%
|
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@dirrm %%DATADIR%%/scripts/index
|
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@dirrm %%DATADIR%%/scripts/utilities
|
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@dirrm %%DATADIR%%/scripts/DB
|
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@dirrm %%DATADIR%%/scripts/biblio
|
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@dirrm %%DATADIR%%/scripts/das
|
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@dirrm %%DATADIR%%/scripts/graphics
|
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@dirrm %%DATADIR%%/scripts/tree
|
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@dirrm %%DATADIR%%/scripts/Bio-DB-GFF
|
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@dirrm %%DATADIR%%/scripts/searchio
|
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@dirrm %%DATADIR%%/scripts/seq
|
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@dirrm %%DATADIR%%/scripts/seqstats
|
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@dirrm %%DATADIR%%/scripts/taxa
|
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@dirrm %%DATADIR%%/scripts/popgen
|
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@dirrm %%DATADIR%%/scripts
|
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@dirrm %%DATADIR%%/models
|
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@dirrm %%DATADIR%%
|