| .. |
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abyss
|
biology/abyss: Update 2.3.0-3 -> 2.3.1
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2021-04-22 10:18:02 -07:00 |
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ad2vcf
|
biology/ad2vcf: Update to 0.1.3
|
2021-06-11 10:05:18 -05:00 |
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artemis
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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avida
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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babel
|
all: Remove all other $FreeBSD keywords.
|
2021-04-06 16:31:13 +02:00 |
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bamtools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bbmap
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biology/bbmap: BBMap short read aligner, and other bioinformatic tools
|
2021-04-18 11:21:29 -05:00 |
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bcftools
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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bedtools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bioawk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biococoa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biolibc
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biology/biolibc: Update to 0.1.3
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2021-06-11 10:05:18 -05:00 |
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bioparser
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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biosoup
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bolt-lmm
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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bowtie2
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biology/bowtie2: Update to 2.4.4
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2021-05-24 11:35:43 -05:00 |
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bwa
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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canu
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cd-hit
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biology/cd-hit: fix build on powerpc
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2021-06-10 00:35:36 +00:00 |
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cdbfasta
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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checkm
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math/py-matplotlib: chase minimum Python version in dependent ports
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2021-05-10 22:13:20 +02:00 |
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clustal-omega
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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clustalw
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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cufflinks
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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cytoscape
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biology/cytoscape: mark unconditionally BROKEN
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2021-05-12 14:55:52 +03:00 |
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ddocent
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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diamond
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biology/diamond: Update to 2.0.9
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2021-04-12 21:55:49 -03:00 |
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dsr-pdb
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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edlib
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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emboss
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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exonerate
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fasta
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Deorbit RESTRICTED && NO_CDROM, part two.
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2021-05-06 13:47:48 +02:00 |
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fasta3
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Deorbit RESTRICTED && NO_CDROM, part one.
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2021-05-06 13:47:41 +02:00 |
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fastahack
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastdnaml
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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fastool
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastp
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fastqc
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fasttree
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biology/fasttree: fix build on powerpc
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2021-06-10 12:25:31 +00:00 |
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fastx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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figtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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fluctuate
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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freebayes
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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garlic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gatk
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gcta
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gemma
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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generand
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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gff2ps
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gmap
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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gperiodic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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graphlan
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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groopm
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math/py-matplotlib: chase minimum Python version in dependent ports
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2021-05-10 22:13:20 +02:00 |
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haplohseq
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hhsuite
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hisat2
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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hmmer
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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htslib
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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hyphy
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biology/hyphy: Update to 2.5.31
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2021-06-05 20:00:24 -03:00 |
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igv
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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infernal
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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iolib
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biology/iolib: Drop maintainership
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2021-05-19 20:56:24 +01:00 |
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iqtree
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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jalview
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biology/jalview: Broken on 11
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2021-06-05 11:53:07 -07:00 |
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jellyfish
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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kallisto
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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lamarc
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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libbigwig
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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libgtextutils
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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libsbml
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biology/libsbml: Rename LIBXML option to LIBXML2
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2021-05-12 05:46:56 +08:00 |
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linux-foldingathome
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Deorbit RESTRICTED && NO_CDROM, part one.
|
2021-05-06 13:47:41 +02:00 |
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mafft
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mapm3
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
|
migrate
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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minimap2
|
biology/minimap2: Update to 2.20
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2021-05-29 16:06:34 -05:00 |
|
molden
|
Deorbit RESTRICTED && NO_CDROM, part one.
|
2021-05-06 13:47:41 +02:00 |
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mopac
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
mothur
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biology/mothur: Update 1.45.2 -> 1.45.3
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2021-05-09 09:11:11 -07:00 |
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mrbayes
|
*: Remove unnecessary 'port' argument from USES=readline
|
2021-05-15 09:14:04 +02:00 |
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mummer
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
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muscle
|
Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ncbi-blast+
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ncbi-cxx-toolkit
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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ncbi-entrez-direct
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biology/ncbi-entrez-direct: Update to 14.9.20210423_1
|
2021-04-26 11:53:11 -05:00 |
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ncbi-toolkit
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ncbi-vdb
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devel/libepoll-shim: update to 0.0.20210418
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2021-04-26 14:17:32 +00:00 |
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ngs-sdk
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biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by explicit 'amd64' instead of $ARCH
|
2021-04-15 10:01:31 -07:00 |
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p5-AcePerl
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-ASN1-EntrezGene
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Cluster
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Coordinate
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Das
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Das-Lite
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-DB-EMBL
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-DB-NCBIHelper
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-FeatureIO
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-GFF3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Glite
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Graphics
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-MAGETAB
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-NEXUS
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Phylo
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-SCF
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-Bio-Variation
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-BioPerl
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-BioPerl-Run
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
p5-transdecoder
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
p5-TrimGalore
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
paml
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
pbbam
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pbseqan
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pear-merger
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
phrap
|
Deorbit RESTRICTED && NO_CDROM, part two.
|
2021-05-06 13:47:48 +02:00 |
|
phred
|
Deorbit RESTRICTED && NO_CDROM, part two.
|
2021-05-06 13:47:48 +02:00 |
|
phyml
|
Clean up some things
|
2021-04-15 10:31:56 +02:00 |
|
picard-tools
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
plink
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pooler
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
primer3
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
prodigal
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
prodigy-lig
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
protomol
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
psi88
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-bigwig
|
biology/py-bigwig: Fix packaging with Python 3.8+
|
2021-04-21 09:41:29 +02:00 |
|
py-biom-format
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-biopython
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-bx-python
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
py-crossmap
|
biology/py-crossmap: Update to 0.5.4
|
2021-04-21 08:31:13 -05:00 |
|
py-cutadapt
|
biology/py-cutadapt: Update strict py-dnaio dep version
|
2021-05-04 08:20:39 -05:00 |
|
py-dnaio
|
biology/py-dnaio: Update to 0.5.1
|
2021-05-04 08:19:25 -05:00 |
|
py-ete3
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-Genesis-PyAPI
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-gffutils
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-gtfparse
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-hits
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One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-loompy
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-macs2
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-multiqc
|
math/py-matplotlib: chase minimum Python version in dependent ports
|
2021-05-10 22:13:20 +02:00 |
|
py-orange3-bioinformatics
|
biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1
|
2021-04-27 01:56:19 -07:00 |
|
py-orange3-single-cell
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-pandas-charm
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-pyfaidx
|
biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5
|
2021-04-23 14:57:50 -07:00 |
|
py-pysam
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-resdk
|
biology/py-resdk: Update 13.2.0 -> 13.3.0
|
2021-05-24 00:26:50 -07:00 |
|
py-scikit-bio
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
py-xenaPython
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
pyfasta
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
python-nexus
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rainbow
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
rampler
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
readseq
|
biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint
|
2021-04-18 09:20:28 -05:00 |
|
recombine
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
ruby-bio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-executables
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-old-biofetch-emulator
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
rubygem-bio-shell
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
samtools
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
scrm
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
seaview
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan1
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqan3
|
biology/seqan3: Update 3.0.2-1195 -> 3.0.3
|
2021-05-29 22:38:08 -07:00 |
|
seqan-apps
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqio
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
seqkit
|
biology/seqkit: Update 0.16.0 -> 0.16.1
|
2021-05-19 23:02:26 -07:00 |
|
seqtk
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
sim4
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
slclust
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
smithwaterman
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
snpeff
|
biology/snpeff: Improvements to Makefile and patches
|
2021-04-19 11:41:58 -05:00 |
|
spoa
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
stacks
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
star
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
stringtie
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
subread
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
tabixpp
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
taxonkit
|
biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit
|
2021-05-26 15:25:22 -07:00 |
|
treekin
|
One more small cleanup, forgotten yesterday.
|
2021-04-07 10:09:01 +02:00 |
|
treepuzzle
|
Remove # $FreeBSD$ from Makefiles.
|
2021-04-06 16:31:07 +02:00 |
|
trimadap
|
One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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trimmomatic
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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tRNAscan-SE
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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ucsc-userapps
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biology/ucsc-userapps: Update to v414
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2021-05-15 10:23:08 -05:00 |
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ugene
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- Update Unipro UGENE to version 38.1 and thus unbreak
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2021-05-18 15:24:55 +00:00 |
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unikmer
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biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set operations on k-mers
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2021-05-26 15:25:21 -07:00 |
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vcf2hap
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biology/vcf2hap: Update to 0.1.3
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2021-06-11 10:05:19 -05:00 |
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vcf-split
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biology/vcf-split: Update to 0.1.2
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2021-06-11 10:05:19 -05:00 |
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vcflib
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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vcftools
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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velvet
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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viennarna
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biology/viennarna: Update 2.4.17 -> 2.4.18
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2021-04-23 18:57:38 -07:00 |
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vsearch
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biology/vsearch: Update to 2.17.0
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2021-04-10 09:02:55 -05:00 |
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vt
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One more small cleanup, forgotten yesterday.
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2021-04-07 10:09:01 +02:00 |
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wise
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Remove # $FreeBSD$ from Makefiles.
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2021-04-06 16:31:07 +02:00 |
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Makefile
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biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit
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2021-05-26 15:25:22 -07:00 |
